Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1632 ATGGTTTTAATAAAGATTTTCAGTCAGATCGTTATTGGCCTGATGGATCAGGCAAGAAAGCCAGAAAGTGATGAGACGTCGGATCTCGTTGATGAAGGGACAGGAAAGAAAACAAGTCGTTCGGTTGAAGGGTCTGCTGATGCAGTAGCTGGGGGCAGCTTGAGTGGAGCTATCCTAAGTGGAGATGTGACTTCTGAAGAGATGAGTAATGATCCGGGATTGAATAAGAAACTACATGAGGCGCCTGCAGAAGCTATGGATCAGGGCGCGCGTGATCAGCAAAATACCAGTGACACATTCCACGTAGTTGATCAAGGAACAAGTTATAATACAAGGAATTTGCATAATAGTGCTGTACTTGAGACCGTGGTTGTAATAGATTCTGCTGAGACAGAGTGTGTGAATGGAGATAATACGAAGTCGGAAGCGAAGGTCAATGAATCGGGGTTGAACAAGGCATCCATGAAATCACCAAAAAGGCCGTCTGAAGCGGATAAAAATTCATGCGTGATCAATATGAAGTCTGGTAGCTGCAGAGAGTTTAGCGAGAATGTGGAGGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTTCTGGGCAACCATCAGATTCAGCTGCTGCTAGCCCTACAAACAGTGCTTCTACTGGAGATTTAATTCAGCTTGGTTGTGCTTGTAAAGATGAGCTGGGTATTGCGCACATTCATTGTGCTGAGGCATGGTTCAAGCTAAAAGGAAACAGATTGTGTGAAATATGTGGTGAAACTGCTAAAAATGTTTCGGGTGTTGCTGATCACGGATTTATGGAAGAGTGGAATGAAAGAACATTCATCGACAACCGTAGCACCTCATCTGGCATCTGTTGTGGATGCTGGCGTGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCTTTTGTTCTGCCATGGTTTTTCCGTGTAAATATGTTCTGA 960 0.4427 MVLIKIFSQIVIGLMDQARKPESDETSDLVDEGTGKKTSRSVEGSADAVAGGSLSGAILSGDVTSEEMSNDPGLNKKLHEAPAEAMDQGARDQQNTSDTFHVVDQGTSYNTRNLHNSAVLETVVVIDSAETECVNGDNTKSEAKVNESGLNKASMKSPKRPSEADKNSCVINMKSGSCREFSENVEGERICRICHLASGQPSDSAAASPTNSASTGDLIQLGCACKDELGIAHIHCAEAWFKLKGNRLCEICGETAKNVSGVADHGFMEEWNERTFIDNRSTSSGICCGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1632 319 MobiDBLite consensus disorder prediction 18 38 - -
Lele16g1632 319 Pfam RING-variant domain 191 252 IPR011016 GO:0008270
Lele16g1632 319 SMART ringv_2 190 253 IPR011016 GO:0008270
Lele16g1632 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 263 IPR013083 -
Lele16g1632 319 MobiDBLite consensus disorder prediction 18 48 - -
Lele16g1632 319 ProSiteProfiles Zinc finger RING-CH-type profile. 183 259 IPR011016 GO:0008270
Lele16g1632 319 MobiDBLite consensus disorder prediction 137 155 - -
Lele16g1632 319 MobiDBLite consensus disorder prediction 137 166 - -
Lele16g1632 319 PANTHER ZINC FINGER, RING-CH-TYPE 79 319 - -
Lele16g1632 319 SUPERFAMILY RING/U-box 188 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1632 Lele-ChrLele16 9458192 9461887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1632 155 318 C3H Transcription Factor Family AT5G05830 38.462 2.15e-30 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1632 16 9458192 9461887 Lele16g1632 16 9458192 9461887 ECH
Lele13g0875 13 20291244 20294578 Lele16g1632 16 9458192 9461887 hybridization
Lele14g0773 14 18677905 18681145 Lele16g1632 16 9458192 9461887 hybridization