Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1608 ATGGCTTCGGGGGCTATATTTTCATCCCTGCGGCGGCGGAGGTCGCCGTCGATAGAAGCCTTTATTGCTCCGGTTGACCTGACAGATGTTGCCTTGGTAAAAACACTCGTGTCCGTGGCCAGCGAGCTCGTCTCTTGCTTCTCTGGGCGTTCGTTCTTCTTTCAACGCAAGAATTCGCGGTCGCTTATACGAAAGGTCGAGGCGATTCAGTCGCTTTTGGAGTATCTCCGGGATAACGGTACGAATATTCCGATAACAGGGTTGGTTTGTCTTAAGGAGTTCTATCTTCTTCTGTATCGGTCGAAGATTCTGCTTTATTATTGCGCGCAGTCGAGTAAGTTATGGCTTTTGCTTCAGACCCATTCAGTTTCTGGCCATTTCCATGATTTGAATAAAGAAATTTCGACTCTTTTGGATGTATTCCCAATTAAGGATGTTCAATTGAGTGAGGATATTAGAGAACAGATGGAGCTATTGCAGAAACAATCAAGAATAGCTAAGTTGTTTATTGACAAGAAAGACGATGAGCTCCGAACTGAGTTCTTATCATATCTCGATGAATTTGAGAATGGACGAGTTCCTGATTCAGCAGGGCTTCGATCATTTTTTATGAAGAAATTGCAGATTGTGGATGCTAGGAGTTGTAGAACAGAAATTGAGTCGTTGGAGGAGCAGATTATTAACCATGAAGGAGATGTTGAGCCAACAATTTCTGTGCTTAATGGTTTGGTTGCATTGACACTTTATTCTAGATTTTTGCTCTTTGGATTTGAGGAAGATGAACTAGAACTAGAAAATGGAGGCCAGGTGAAAAAACAGAAGGAGAGATTGATTACTCAAGAGATTGCTGAAACATTTGTAACCATTCCTAAGGACTTTTACTGCCCAATATCGTTGGATTTGATGAGAGACCCAGTGATAATCGCCACGGGACAAACATATGACCGAAGCTCCATATCAAGGTGGTTGGAAGAAGGGCATTGTACTTGTCCAAAAACAGGGCAAATGCTTCCTCACACAAAGCTTGTCCCAAATCGAGCTCTGAAGAATTTGATCATGAAGTTCATCACCGCACATGGAATCCCTCGTGACTCGCTGGAGGCGGTAGATGTAGTGCCAGATACCTTTTCAATGTCTTCTCCATCGAAAGCTGCCCTCAAAGCCAATGGGGCAACGGCGGTGCTTCTCATTCAGCAGCTGGAGAATGGATCACAAGCTGCACAGACTATTGCTGCTCGGGAGATACGATTGCTTGCGAAAACAGGCAAGGAAAACCGTGCGTTCATCGCAGAAGTCGGGGCGATTCCTTGCCTTTGTAAACTACTTTCATCTCCTAATGCCATTGCTCAGGAGAATTCAGTGACAGCATTGCTCAACCTGTCAATATATGAGAAGAACAAGAGCCGGATCATCGATGAAGAAGGTTGTCTGGAATCCATAGTTGATGTCTTGAGATTAGGCCACACGACAGAGGCAAGAGAGAATGCTGCCGCAACATTGTTCAGCCTCTCAGCAGTCCATGAATATAAGAAGAGAATTGCAGATAAGGCAGGAGCAATCGAAGCACTTGCAAGGCTTTTGCAAGAGGGAAACTTAAGAGGAAAGAAAGATGCAGTAACAGCACTATTCAATCTTGCCACCCACACTGATAACTGTATCAGAATGATTGAAGCCGGAGCAATAACTGCTCTAGTTGGCGCTTTGTGTACCGAAGGAGTGGCTGACGAAGCAGCAGGCACTCTCGCCTTGATTGTCCGGCAACCTATCGGAGCCAAGGCAGTGGTGAATGAGGAAGAAGCGGTGGCCGGATTGATGGGAATGATGCGTTGTGGAACCGCACGGGGGAAAGAGAATGCTGTGGCAGCATTGCTGGAGCTGTGCCGGAGTGGAGGCGCAGCAGCAATCGAGAGGGTGGTAAGGGCACCGGCTTTAGCCGGATTGCTCCAAACCCTACTTTTTACAGGGACAAAAAGAGCTAGAAGGAAAGCAGCTTCGCTTGCCAGAGTGTTTCAGAGATGTGGAAATGCATCTCTACATTGTGTTGGACTAGGTTTAGGATATGCATATGCTAGCAATTCAGCTACTGGTAGAGATACAACCTTCACAGGGGATGTTTCAGTACCCATGTCTATTTCTGTCCCTATCTTGTAG 2151 0.4589 MASGAIFSSLRRRRSPSIEAFIAPVDLTDVALVKTLVSVASELVSCFSGRSFFFQRKNSRSLIRKVEAIQSLLEYLRDNGTNIPITGLVCLKEFYLLLYRSKILLYYCAQSSKLWLLLQTHSVSGHFHDLNKEISTLLDVFPIKDVQLSEDIREQMELLQKQSRIAKLFIDKKDDELRTEFLSYLDEFENGRVPDSAGLRSFFMKKLQIVDARSCRTEIESLEEQIINHEGDVEPTISVLNGLVALTLYSRFLLFGFEEDELELENGGQVKKQKERLITQEIAETFVTIPKDFYCPISLDLMRDPVIIATGQTYDRSSISRWLEEGHCTCPKTGQMLPHTKLVPNRALKNLIMKFITAHGIPRDSLEAVDVVPDTFSMSSPSKAALKANGATAVLLIQQLENGSQAAQTIAAREIRLLAKTGKENRAFIAEVGAIPCLCKLLSSPNAIAQENSVTALLNLSIYEKNKSRIIDEEGCLESIVDVLRLGHTTEARENAAATLFSLSAVHEYKKRIADKAGAIEALARLLQEGNLRGKKDAVTALFNLATHTDNCIRMIEAGAITALVGALCTEGVADEAAGTLALIVRQPIGAKAVVNEEEAVAGLMGMMRCGTARGKENAVAALLELCRSGGAAAIERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCGNASLHCVGLGLGYAYASNSATGRDTTFTGDVSVPMSISVPIL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1608 716 ProSiteProfiles U-box domain profile. 288 362 IPR003613 GO:0004842|GO:0016567
Lele16g1608 716 SMART arm_5 422 462 IPR000225 GO:0005515
Lele16g1608 716 SMART arm_5 463 505 IPR000225 GO:0005515
Lele16g1608 716 SMART arm_5 507 547 IPR000225 GO:0005515
Lele16g1608 716 SMART arm_5 548 586 IPR000225 GO:0005515
Lele16g1608 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Lele16g1608 716 Pfam Armadillo/beta-catenin-like repeat 516 546 IPR000225 GO:0005515
Lele16g1608 716 Pfam Armadillo/beta-catenin-like repeat 423 461 IPR000225 GO:0005515
Lele16g1608 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
Lele16g1608 716 Pfam U-box domain 289 359 IPR003613 GO:0004842|GO:0016567
Lele16g1608 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 362 IPR013083 -
Lele16g1608 716 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Lele16g1608 716 PANTHER U BOX DOMAIN-CONTAINING 56 673 - -
Lele16g1608 716 Gene3D - 394 512 IPR011989 -
Lele16g1608 716 FunFam RING-type E3 ubiquitin transferase 365 687 - -
Lele16g1608 716 SUPERFAMILY ARM repeat 395 670 IPR016024 -
Lele16g1608 716 SMART Ubox_2 292 355 IPR003613 GO:0004842|GO:0016567
Lele16g1608 716 CDD RING-Ubox_PUB 293 335 IPR045210 -
Lele16g1608 716 SUPERFAMILY RING/U-box 278 363 - -
Lele16g1608 716 Gene3D - 513 669 IPR011989 -
Lele16g1608 716 Coils Coil 212 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1608 Lele-ChrLele16 9347336 9349486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1608 1 716 U-box Gene Family AT1G29340 66.894 0.0 908