Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1606 ATGGATGAAGCTCAGGGCAGTTCTAGCACCCTGCCTCCTTTCCTGGCAAAGACTTATGAGATGGTGGACGATCCTTCCACAGATTTGATTGTTTCCTGGAGTGCCTCTAACAAAAGTTTCATAGTATGGAATCCGCCAGAATTTGCAAGTGAGTTGCTACCAAGATTCTTTAAGCACAATAACTTCTCTAGTTTCATCAGACAGCTGAACACATATGGTTTTAGAAAAGTTGATCCAGAACAATGGGAATTTGCAAATGATGATTTTATAAGAGGTCAATCGCATCTTTTGAAGAATATACATAGAAGAAAGCCAGTTCATAGCCATTCTTTACAGAATCTCCAAGTACAGGGAGCTTCTCTATTAACGGAACCAGAAAGACAGAGTTTAAAAGGCAAAATAGAGAGACTGAAACATGAAAACGAACAACTTCGTCTAGAGTTAGAGAGACATGAGCAGGAGTGGCAAGCAAGTGAAATTAAAATACGGTGCTCAAAGGAGAGATTGGGAAAGTTGGAAAGGACACAACAAAAGATGGTCTCTTCTGTTTCTCAAGTGTTGCAGAAACCCGGAATTGCCTCCAACCTGTTGCAATTGTCAGAAACCCTGTATAGAAAACGAAGGTTGCCAAGAGTTGGTTACTTTTGTGATGAAGCTGTAATTGAAGATGCTACAGAATCTTCCTCAGTGATACCTCGAGATAATGCCGTTATCACTTCTGTTCTGTCATCAAATGTGGAGCGACTGGAACAGTTGGAATCATTGCTGTTATTCTGGGAGAACATTGCTCATGATTTTAGTGATTCCTTTGCTCATGGCCATTCAAATATGCATCTTGATGAATCTACAAGTTGTGCTGATAGTCCTTCTCTCTCTTGTATGCAACTTGATGACGAAGTTCACCCCATGCCATCTGGAATTGACATGAACTCTGAGCCAGCTGGAGCTACTGTTTCTGATCCTGGTTCATCAATAGAAAAACCTGTGGGAACAAGCACTGTAGCATCAGGCGTCAATGATGTATTCTGGGAACAGTTCTTAACAGAGAATCCTGGTTCTTCAGAAACACAGGAAGTACAGTCAGAACAAAAGAATTCTGATAGCAGAAAGAATGAAGGAAAGCCTAGTGATCGGAGTAAACTTTGGTGGAGCATAAACAATGTAAATAGCCTTTCAGAACAGATGGGGCATCTTAGCCAAACAGAGAAAGCTTAA 1215 0.4091 MDEAQGSSSTLPPFLAKTYEMVDDPSTDLIVSWSASNKSFIVWNPPEFASELLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFIRGQSHLLKNIHRRKPVHSHSLQNLQVQGASLLTEPERQSLKGKIERLKHENEQLRLELERHEQEWQASEIKIRCSKERLGKLERTQQKMVSSVSQVLQKPGIASNLLQLSETLYRKRRLPRVGYFCDEAVIEDATESSSVIPRDNAVITSVLSSNVERLEQLESLLLFWENIAHDFSDSFAHGHSNMHLDESTSCADSPSLSCMQLDDEVHPMPSGIDMNSEPAGATVSDPGSSIEKPVGTSTVASGVNDVFWEQFLTENPGSSETQEVQSEQKNSDSRKNEGKPSDRSKLWWSINNVNSLSEQMGHLSQTEKA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1606 404 MobiDBLite consensus disorder prediction 349 382 - -
Lele16g1606 404 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 353 IPR027725 -
Lele16g1606 404 MobiDBLite consensus disorder prediction 299 331 - -
Lele16g1606 404 MobiDBLite consensus disorder prediction 362 377 - -
Lele16g1606 404 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g1606 404 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g1606 404 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g1606 404 FunFam Heat shock transcription factor 1 7 104 - -
Lele16g1606 404 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g1606 404 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Lele16g1606 404 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g1606 404 Coils Coil 127 161 - -
Lele16g1606 404 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g1606 404 Gene3D - 6 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1606 Lele-ChrLele16 9339570 9340898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1606 7 404 HSF AT4G18880 51.605 2.13e-123 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele16g1606 HSF_DNA-bind 2.5e-31 CL0123