Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1574 ATGGCAGAAGGGTCATCAACAGATTCATCGGGCACGCAGAAAGTTCCCTTTCACAAGCTCTTCACTTTCGCGGACCGTCGCGACGTGGTCTTGATGACCATCGGTACGATCTCTGCGTGGGCCAATGGGTTATCACAGCCTTTAATGACGGTGATTTTCGGGAAGCTCATCAACACTTTTGGTTCGACTGATCAATCACGCATTGTGCATGAAGTTTCCAAGATTTCATCACTCTTCGTATACCTGGCTATTGGTTCTGGCGTTGCTTCATTTCTCCAGGTAGCTAGTTGGATGGTGACAGGAGAAAGGCAAGCCGCAAGGATCCGTGGTTTGTACTTGAAAACAATATTAAGACAGGACATTGCCTTCTTCGACACTGAAACAACCACAGGGGAGGTCATTGGTAGGATGTCTGGTGATACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATGCAACTTGCTTCAACTTTTGTTGGTGGTTTTGTGGTTGCCTTTACAAGAGGATGGCTACTTGCTCTGGTTTTGCTTTCGTGTGTTCCATTGGTTGTCATTGCTGGTGGAATCGCGTCAATATTTGTGGCAAAAATGGCAAGTCGTGGACAATTTGCTTATGCTGAAGCAGGAAATGTGGTGGAACAAACTGTTGGAGCCATTAGAACAGTTGCATCTTTCACTGGGGAGAAGAAAGCAGTAGAAAACTATAATAGAAAGTTGAAAGTTGCCTATAAAACAATGGTTAAACAAGGGATGGCCACTGGCCTTGGATTTGGAGTTGTTTTGCTCATAATGTTCAGCACCTATGGACTTGCAATGTGGTATGGAGCCAAACTGATCCGTGAGAGAGGGTACAACGGTGGAGCTGTCATCACTATAATAATAGCGCTTATGACAGGTGGAATGGCACTGGGACAGACATCGCCAAGTCTTAATGCATTTGCAGCAGGTCAAGCTGCTGCATACAAGATGTTTGAGACTATTAAAAGAAAACCCAAAATTGATGCATATGACACTAATGGGGTTTCCTTGGAGGACATCAAGGGAGATATTGAACTTAAAGGTGTTTATTTCAGATACCCTGCAAGGCCAGACGTACAGGTTTTTGATGGATTCTCACTGTATGTTCCAAGTGGCACAACCGCTGCTTTAGTGGGTCAAAGTGGAAGTGGAAAGTCAACCGTAATTAGTTTGTTAGAAAGATTCTATGACCCTGATGCTGGTGAAGTACTTATAGATGGAGTTAATTTGAGGGACTTTAAACTTAGATGGATAAGAGAAAAGATTGGGCTTGTTAGTCAGGAGCCGATGTTATTTACGGGTACCATCAAAGAAAATATAGCATATGGTAAGGATAATGCAACTGATGAGGAAATAACTACCGCAACAAAGCTTGCCAATGCTGAAAAATTTATTGACAAACTGCCAAAGGGCCTTGATACCATGGTAGGGGAGCATGGAACTCAACTTTCTGGGGGACAAAAGCAACGAATCGCCATTGCAAGGGCAATTCTGAAGAACCCTAAAATCCTCCTTCTTGATGAAGCAACAAGCGCACTAGATGCTGAATCTGAACGCATAGTCCAAGATGCATTGGTAAATGTTATGTCAAACAGGACCACCGTGGTTGTTGCTCATCGTTTGACAACTATTAGAAATGCTGATGCCATAGCAGTGTTGTATCAAGGGAAAATAGTGGAAAAAGGAACTCATGATGAGTTAATCCAGAATCCTGATGGTGCTTATTCTCAGCTTGTTCGTCTCCAAGAAGGCCCTGGTGAAGCTGAAGATGGAGAAAGGTCTGAAACAGATAAGGCCACTACCAGTCATATAGACAGAAACATGGCTTCCTCTGAGAACCAAAAATCATCGTTGAGATCAATTAGCAGAGGTTCGTCAGGAAGGCAATCTTCTCCCTTACTCAGCCGTGCTCTTTCTAATCAAACTAATATGTATCCTTCGGGAGGAGGAGTTGATGAACTTGGAAACACCAAATCTGCTAAGGTCAAGCGGCAAGAGGTTTCTATTATGCGTTTGGCCTATTTGAACAAACCTGAGATTCCTGTGTTATTGCTTGGATCTGTTGCTGCTGTAGTACATGGCGTAATTTTACCTATATTTGGCCTCTTACTTTCATCAGCTATAAAAATGTTATATAAACCACCAGAGCAAATGAAGAAAGAATCCAAGTTTTGGGGACTTCTTTTTGTGATTTTGGGTTTGGTTTCTTTGATATCTCTACCATTACAAAATTACTTCTTTGGAGTTGCTGGTGGAAAATTGATAGAACGAATTCGTTCTTTGACATTTGAGAAGGTTGTGCACCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACAGATGCTTCGTCAGTGAGAGGTCTTGTTGGGGACACCTTGGCCCTTATTGTGCAGAACATAACAACAATAACTACAGGCCTCCTTATAGCATTTGTAGCTAATTGGAGACTCTCTTTAGTTGTTCTTGCAGTATCACCTTTGATTCTTTTGCAAGGAGTATTTCAAGCGAGGTTTCTGAGAGGGTTTAGTGCAGATGCTAAGCTGATGTATGAAGAAGCCAGTCAGGTGGCAAATGATGCAGTTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAACCTAAGGTCATGGAAATGTATGGGAAGAAATGTGAAGGGCCAGAAAAACAAGGCATTCGACTAGGTCTCGTTAGTGGTGCAGGTTATGGCTTCTCTTTCTTTGCTTTATACTGCACAAATGCTCTGTGTTTCTATGTAGGATCCATCTTTGTAAAGCAAGGGTTAACAAATTTTGGACAAGTTTTCAAGGTTTTCTTTTGTTTAACAATTACAGCAATAGGAGTTTCCCAGACCAGTGCCTTGGCACCAGACCGCAACAAGGCTAAGGACTCCACAGCTTCAATATTTGAAATTCTGGACAGTAAACCCAACATTGACTCTAGTAGCGATGAGGGCATGACATTAGATTCTGTAAACGGTGATATTGAACTCAGAAATGTCAGCTTCACATATCCTACAAGGCCTGATGTTCAAATTTTCAGAGATTTGAACCTAAACATGCCCTCTGGGAAGACTGTTGCTTTGGTTGGAGAAAGTGGCAGTGGAAAATCTACAGTTACAAGTCTCATAGAGAGATTTTACGACCCTGATTCAGGACTCGTACTGCTAGATGGAATCGAAATCAAGGAGCTGAAGCTAAGCTGGTTGAGGCAGCAAATGGGGTTGGTCAGTCAAGAACCAATTCTTTTCAATGAAACCATCCGTGACAACATGGCTTATGGCAAAACAGGAGGCGCTAATGAAGAAGAGCTAGTTGCAGCAGCAAAAGCAGCCAATGCATACGAGTTCATAAGCTCACTTCCGAGTGGTTTTGACACATTTGTTGGGGAAAGAGGCACACAATTGTCAGGAGGCCAAAAGCAGAGGATTGCCATTGCAAGAGCCATATTGAAAAATCCAAAAATCCTTTTGCTTGATGAGGCAACCAGTGCATTAGATGCAGAATCAGAGCGTGTGGTTCAAGAAGCTTTAGACAATGTTATGGTGAACAGGACCACTGTAGTGGTGGCTCATCGTCTCTCAACTATTAAAGGTGCTGATGTTATAGCAGTAGTGAAGAATGGAATGATCGCAGAAAAGGGAAGGCATGAGACCTTGATGAAGATTGAAGATGGTGTTTATGCTTCGTTGGTAGCTCTCCATATGAGTGCATCATAA 3777 0.426 MAEGSSTDSSGTQKVPFHKLFTFADRRDVVLMTIGTISAWANGLSQPLMTVIFGKLINTFGSTDQSRIVHEVSKISSLFVYLAIGSGVASFLQVASWMVTGERQAARIRGLYLKTILRQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFMQLASTFVGGFVVAFTRGWLLALVLLSCVPLVVIAGGIASIFVAKMASRGQFAYAEAGNVVEQTVGAIRTVASFTGEKKAVENYNRKLKVAYKTMVKQGMATGLGFGVVLLIMFSTYGLAMWYGAKLIRERGYNGGAVITIIIALMTGGMALGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVSLEDIKGDIELKGVYFRYPARPDVQVFDGFSLYVPSGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLRDFKLRWIREKIGLVSQEPMLFTGTIKENIAYGKDNATDEEITTATKLANAEKFIDKLPKGLDTMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVNVMSNRTTVVVAHRLTTIRNADAIAVLYQGKIVEKGTHDELIQNPDGAYSQLVRLQEGPGEAEDGERSETDKATTSHIDRNMASSENQKSSLRSISRGSSGRQSSPLLSRALSNQTNMYPSGGGVDELGNTKSAKVKRQEVSIMRLAYLNKPEIPVLLLGSVAAVVHGVILPIFGLLLSSAIKMLYKPPEQMKKESKFWGLLFVILGLVSLISLPLQNYFFGVAGGKLIERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASSVRGLVGDTLALIVQNITTITTGLLIAFVANWRLSLVVLAVSPLILLQGVFQARFLRGFSADAKLMYEEASQVANDAVGSIRTVASFCAEPKVMEMYGKKCEGPEKQGIRLGLVSGAGYGFSFFALYCTNALCFYVGSIFVKQGLTNFGQVFKVFFCLTITAIGVSQTSALAPDRNKAKDSTASIFEILDSKPNIDSSSDEGMTLDSVNGDIELRNVSFTYPTRPDVQIFRDLNLNMPSGKTVALVGESGSGKSTVTSLIERFYDPDSGLVLLDGIEIKELKLSWLRQQMGLVSQEPILFNETIRDNMAYGKTGGANEEELVAAAKAANAYEFISSLPSGFDTFVGERGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERVVQEALDNVMVNRTTVVVAHRLSTIKGADVIAVVKNGMIAEKGRHETLMKIEDGVYASLVALHMSAS 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1574 1258 Gene3D - 352 622 IPR027417 -
Lele16g1574 1258 PANTHER ABC TRANSPORTER B FAMILY 4 593 - -
Lele16g1574 1258 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 315 - -
Lele16g1574 1258 Pfam ABC transporter 1034 1183 IPR003439 GO:0005524
Lele16g1574 1258 Gene3D - 1005 1257 IPR027417 -
Lele16g1574 1258 CDD ABC_MTABC3_MDL1_MDL2 1015 1251 - -
Lele16g1574 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1015 1252 IPR003439 GO:0005524
Lele16g1574 1258 Gene3D ABC transporter type 1, transmembrane domain 78 989 IPR036640 GO:0005524|GO:0016020
Lele16g1574 1258 MobiDBLite consensus disorder prediction 592 642 - -
Lele16g1574 1258 FunFam ABC transporter B family member 9 19 350 - -
Lele16g1574 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele16g1574 1258 FunFam ABC transporter B family member 1 673 981 - -
Lele16g1574 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 354 590 IPR003439 GO:0005524
Lele16g1574 1258 ProSitePatterns ABC transporters family signature. 1155 1169 IPR017871 GO:0005524|GO:0016887
Lele16g1574 1258 Pfam ABC transporter 373 521 IPR003439 GO:0005524
Lele16g1574 1258 ProSitePatterns ABC transporters family signature. 493 507 IPR017871 GO:0005524|GO:0016887
Lele16g1574 1258 FunFam ABC transporter B family member 1 1005 1255 - -
Lele16g1574 1258 SUPERFAMILY ABC transporter transmembrane region 681 999 IPR036640 GO:0005524|GO:0016020
Lele16g1574 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1253 IPR027417 -
Lele16g1574 1258 SMART AAA_5 1042 1235 IPR003593 -
Lele16g1574 1258 SMART AAA_5 381 573 IPR003593 -
Lele16g1574 1258 MobiDBLite consensus disorder prediction 595 612 - -
Lele16g1574 1258 CDD ABC_MTABC3_MDL1_MDL2 354 592 - -
Lele16g1574 1258 Pfam ABC transporter transmembrane region 694 965 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele16g1574 1258 Pfam ABC transporter transmembrane region 32 303 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele16g1574 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 694 980 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele16g1574 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 592 IPR027417 -
Lele16g1574 1258 MobiDBLite consensus disorder prediction 613 642 - -
Lele16g1574 1258 SUPERFAMILY ABC transporter transmembrane region 19 338 IPR036640 GO:0005524|GO:0016020
Lele16g1574 1258 CDD ABC_6TM_Pgp_ABCB1_D2_like 683 998 - -
Lele16g1574 1258 FunFam ABC transporter B family member 1 344 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1574 Lele-ChrLele16 9156261 9161958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1574 695 1257 Calmodulin-binding Proteins AT2G36910 43.915 4.71e-139 454