Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1562 ATGACCTTTAAATACAGTTCCGTTAAGGGCGATGCAATGAAGCAGTCTTTTGACATTTCGGCTTCTGGTCCAACCAAGTTTCCATCTATAAATATTCCTAAAGAAATGGGACGCAATGCTTGGGAAGTTTTATCTGGATCTGATGCCTACCATGCCTCATCGGATGCTAGCCTTTTTTCTAGCTCATTACCTGTTTTGCCACATGAAAAGTTGAACTTGAACGACACCGAAAATGAGTATCAGTCTGTGGATGACATCTCATCTGGCTTTAAAAAGCTCCAACAAGATTTAGAGGTTAATGAATCACTTGAAGATGCAAATATTCATGCACTTGGAACAACGCTTCCAGATGATGAGGATGAGCTTTTAGCTGGCATAACGGATGATTTTGACCTGAGTGGTTTGCCTGGTTCCTTGGAGGACTTGGAAGATTATGATCTTTTTGGTGGTGGAGGCATGGAACTGGAAAATGATCCCCAGGAAAGTCTTACAATGGGGATTTCAAAATTAAGTTTCTCTGATTGTACAATTGGCAATGGTTTGCCCCATTATTCTTTTCCTAATGGCGTTGGAACTGTTGCTGGGGAACATCCCTATGGGGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAATTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCGTGTAAACATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCACTGCGGCGGAGGAAACTTGACATTCATTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAATCAAGGAACCTTGGTGGTTTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTTCGACAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTCATTGAATTTTATGATGTCAGAGCTGCAGAAGTGGCACTTAAATCATTGAACAGGAGTGACATAGCGGGTAAACGTATAAAGCTGGAACCTAGTCGTCCTGGTGGAGCTCGTCGAAATTTGATGCTCCAACTAAATCAAGATCTTGATCAAGACGAATCTGGGAATTTTCGACTTCAAGTGGGTTCACCTGTAGCCAACTCTCCACCAGGTAACTGGTTGCAGTTTAACAGTCCCATTGAACATAAGCCAATGCAATCTATCAGTAATTCTCCTGGTTCTAGGATTATGAGCCCAACAACTGGCAACCATTTACCAGGATTAGCTTCAATCTTGCAACCTCAAGGATCTAACTCTATAAAGGGTGCAGCTATTGGTAAGGACCTAGGAAGGAGTAGTCATGGAGATCAAATGTTTAGTAGTACCAATTCATCACATGGAGCCACATTTCAATCTCACTCACTTCCAGAACCAACATTCGGCCAATATCGTGGAGCTTTGTCCTCTTTTGGTCCATCAACTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGGCCTCAGTTTCTTTGGGGAAATTCAAGCTTATACTCTGAGCACACCAAACCTTCACCCTGGCCTAGATCATCTGTAGCGCCTCCATTTACATCAAATGGAAAGGGTCATGGCTTCCCATACTCTGGTCAGAATGGTTCCTTTGTTGGATCTTCCCAGCATCATCTTCATCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGCGCTTTGGTTTTCTTCCTGAAACACCTGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCTTAAATGTGGGACACAATGATGGAAACTACATGGTTAACATGGGTGGATCTGTTAACGCTGGCATTACTATACCGAGGAATATGTCTGAAAATGTTCAATCAAACTTTAGAATGAGATCTCCAAGGCTTAGCCCTGTGTTTCTGGGTAATGTTCCTTACTCTGGGCTGCCACCCACTGCCCTGGATGGTTTGACTGACCGTGGAAGGAGTAGACGGATAGAGAATACTGGTAACCAAGTTGATAGCAAGAAGCAATTTGTGCTTGACTTGGATAAGATTAAAAGTGGTGAAGATGCAAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGTTACTAGCTGCCATTGACGAAAATCATAGGGGCACCTATGATTTCCTCTATCTGCCTATTGATTTTAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTGTCACCCTCTCTTATCGTTACATTCTACGAGACATTCAATGGAAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCGTTGGCATATGCTCGAATCCAAGGAAAGGTTGCCCTTGTGAGCCACTTCCAGAATTCAAGTTTGATGAATGAAGACAAGCGATGCCGCCCTATTCTTTTCCACTCAGAGGGTCCTGAAGCTGGTGATCAGATCGTTCAAGAACATCTTCCCTCCCACAATCTCAATATCCAGGTCCTCAGGTCAAGTGATTCACATTTGAATGACTCTCCTGGAGGCCCCCCAAATGATAACCCTCCTTTGAACTTGGAGACATGTTAA 2610 0.4215 MTFKYSSVKGDAMKQSFDISASGPTKFPSINIPKEMGRNAWEVLSGSDAYHASSDASLFSSSLPVLPHEKLNLNDTENEYQSVDDISSGFKKLQQDLEVNESLEDANIHALGTTLPDDEDELLAGITDDFDLSGLPGSLEDLEDYDLFGGGGMELENDPQESLTMGISKLSFSDCTIGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEVALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDESGNFRLQVGSPVANSPPGNWLQFNSPIEHKPMQSISNSPGSRIMSPTTGNHLPGLASILQPQGSNSIKGAAIGKDLGRSSHGDQMFSSTNSSHGATFQSHSLPEPTFGQYRGALSSFGPSTSNGSSVETLSGPQFLWGNSSLYSEHTKPSPWPRSSVAPPFTSNGKGHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERRFGFLPETPETSFMNHVGYGGLNVGHNDGNYMVNMGGSVNAGITIPRNMSENVQSNFRMRSPRLSPVFLGNVPYSGLPPTALDGLTDRGRSRRIENTGNQVDSKKQFVLDLDKIKSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIVTFYETFNGKKWEKFNSEKVASLAYARIQGKVALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSHNLNIQVLRSSDSHLNDSPGGPPNDNPPLNLETC 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1562 869 MobiDBLite consensus disorder prediction 463 482 - -
Lele16g1562 869 SUPERFAMILY RNA-binding domain, RBD 202 365 IPR035979 GO:0003676
Lele16g1562 869 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 278 IPR000504 GO:0003723
Lele16g1562 869 CDD RRM2_MEI2_like 289 359 - -
Lele16g1562 869 SUPERFAMILY RNA-binding domain, RBD 707 791 IPR035979 GO:0003676
Lele16g1562 869 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 363 IPR000504 GO:0003723
Lele16g1562 869 MobiDBLite consensus disorder prediction 529 577 - -
Lele16g1562 869 CDD RRM3_MEI2_like 708 793 IPR034454 -
Lele16g1562 869 Pfam RNA recognition motif 2 705 801 IPR007201 -
Lele16g1562 869 MobiDBLite consensus disorder prediction 846 869 - -
Lele16g1562 869 CDD RRM1_MEI2_like 204 280 IPR034453 -
Lele16g1562 869 MobiDBLite consensus disorder prediction 529 565 - -
Lele16g1562 869 Gene3D - 194 288 IPR012677 -
Lele16g1562 869 PANTHER RNA RECOGNITION MOTIF-CONTAINING 20 848 - -
Lele16g1562 869 Gene3D - 289 383 IPR012677 -
Lele16g1562 869 MobiDBLite consensus disorder prediction 462 482 - -
Lele16g1562 869 FunFam MEI2-like protein 5 isoform 2 194 288 - -
Lele16g1562 869 FunFam Protein MEI2-like 1 289 384 - -
Lele16g1562 869 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 357 IPR000504 GO:0003723
Lele16g1562 869 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 271 IPR000504 GO:0003723
Lele16g1562 869 SMART rrm1_1 707 783 IPR000504 GO:0003723
Lele16g1562 869 SMART rrm1_1 291 359 IPR000504 GO:0003723
Lele16g1562 869 SMART rrm1_1 206 274 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1562 Lele-ChrLele16 9072815 9078893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1562 200 368 Eukaryotic Initiation Factors Gene Family AT1G71770 25.389 2.55e-06 49.3