Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1545 ATGGGTCGTCGTAAGATCAAGATGGAGAGGGTGAAGGACCCAGCGTCGAGATTGGTGACGTTCTCAAAGCGCCGGAACGGACTCTTCAAGAAAGCGAACGAGCTAGCAATCCTGTGCGGCGCCAAACTCGCCATTGTCGTGTTCTCGCCAGGTGGCAAACCCTTCTCCTTCGGCCATCCGTCCGTCGACGCCGTGACTCAGAGGTTTCTGCGGCAACTCCAAGGCGAGGACAAGGACGAGGACGATGACGATGACGAGGAGGAGGAGAAGGCAAAATCGCCGGCATGCGGGACCTCTTCTTCTTCATCGAAGAAAGCTTCTCGAAAAGCGGAGAAACTGAACAAGCGGCTGATGAATCTGACGAAGGAGCTGGAGGAAGAGAAGAAAAAGGGAGCGTTGCTGGACAAGGCAATCGAGGAGAAGAAGATCAAGTATGGGCTCGGGCCTGAGAGTGGTCCTGATTATCTAAGCAAGCTCCAGGGATTGAAGCAATCGCTGGAGAAACTGAGGGAAGAGGTGAAGCTGCGGAAGAGAGAAACGGAGGCTGCGTCGTCGTTGCTGGTACTCGCAGAGAAATTACAGTTGAAGGAAGACAACAATGTTGGGGATGAAAGTGATGATGGCGGTGAGACCAGAAATGCAAAGTAA 648 0.5324 MGRRKIKMERVKDPASRLVTFSKRRNGLFKKANELAILCGAKLAIVVFSPGGKPFSFGHPSVDAVTQRFLRQLQGEDKDEDDDDDEEEEKAKSPACGTSSSSSKKASRKAEKLNKRLMNLTKELEEEKKKGALLDKAIEEKKIKYGLGPESGPDYLSKLQGLKQSLEKLREEVKLRKRETEAASSLLVLAEKLQLKEDNNVGDESDDGGETRNAK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1545 215 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Lele16g1545 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele16g1545 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele16g1545 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele16g1545 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele16g1545 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele16g1545 215 PANTHER MADS BOX PROTEIN 3 174 - -
Lele16g1545 215 MobiDBLite consensus disorder prediction 196 215 - -
Lele16g1545 215 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Lele16g1545 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele16g1545 215 Coils Coil 156 183 - -
Lele16g1545 215 MobiDBLite consensus disorder prediction 75 114 - -
Lele16g1545 215 Coils Coil 103 130 - -
Lele16g1545 215 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Lele16g1545 215 MobiDBLite consensus disorder prediction 194 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1545 Lele-ChrLele16 8958172 8958819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1545 1 131 Type I MADS-box Gene Family AT2G34440 51.145 2.02e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele16g1545 SRF-TF 3.8e-23 No_clan