Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1540 ATGGTAACTTTCAAGTTCCATCAGTATCAGGTCGTTGGAAGGGCTCTCCCTACGGAATCAGATGAACACCCGAAGATTTACCGCATGAAGTTATGGGCCACTAACGAGGTTCGCGCCAAGTCGAAGTTCTGGTATTTTCTGAGGAAACTGAAGAAGGTCAAAAAGAGCAACGGTCAAGTGCTTGCTATCAATGAGATCTTTGAGAAGAACCCAACGACGATAAAGAACTATGGTATTTGGCTGCGGTATCAGAGCAGGACTGGCTACCACAACATGTACAAGGAATACCGGGATACCACTCTAAATGGCGCGGTCGAGTCGATGTACACTGAGATGGCTTCCCGCCACAGGGTCCGGTTCCCCTGCATTCAAATTATTAAGACCGCCACGATCCCGGCAAAGCTTTGCAAAAGGGAGAGCAGCAAACAGTTCCACAACTCCAAAATCATGTTCCCATTGGTTTACAAGAAAGTCAGACCACCCACAAGAAAGCTGAAGACCACATTCAAGGCATCAAGGCCCAATTTAATGCATATTTCTTTGAGGCCAGTCTTCATTTTTATCCTTTCATGTTATGTTTCTTCTCTTCCTTTCACTGAGTGTTCATTCCTTAAGGAGGTGACTCAATCAGGCAGCTACAAGAGCTCAAATCACAAAATCAACAAGATTAATTCTCAGAAGGCATCTGATATAGCACTTCATGGATTGCTACTGTGGGCTTCAATGGGATTCTCGATGCCATTAGGGATACTTGCTATCAGAATGTCAAGTAGAGAGGGGAATGGATCAACAAGGAATAGGGTCCTCTTTTATCTCCATGTTGTATTTCAGATGCTCTCAGTGCTTCTTGCTACAGTTGGAGCAGTCATGTCCCTGAAGAACTTTGAGAATTCATTTGATAACAACCATCAAAGAATGGGTCTTGCACTTTATGGTGCTATATTGGTTCAATCTTTGATTGGATTTTTCAGGCCTCACAGGGAAAAGAAAGAGAGGACTTATTGGTACTTTGTTCACTGGATATTAGGGACAATAATCTCTTTTGTAGGGATCATCAACATTTACACAGGTCTCAAAGCCTACCATAAGAGAACCTTAAAAAGCACAACTCTTTGGACTATCCTGTTCACAGCACAAGTCTCTTTCATTGCATTGATTTACCTTTTACAAGACAAAATGGAGTACATAAAAAAGCAAAGGGTGATTCCAGGCACAGAGTCAACTGAACCTTCTGATCAAGACATACCTCATTTGCAGAACCAGAATGAGTTATTACCAGTAGTAGCATGTGGGAAGAAGAAAAATGCACTTAGCAACTTGTTTGACCAATAA 1332 0.4227 MVTFKFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVESMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIMFPLVYKKVRPPTRKLKTTFKASRPNLMHISLRPVFIFILSCYVSSLPFTECSFLKEVTQSGSYKSSNHKINKINSQKASDIALHGLLLWASMGFSMPLGILAIRMSSREGNGSTRNRVLFYLHVVFQMLSVLLATVGAVMSLKNFENSFDNNHQRMGLALYGAILVQSLIGFFRPHREKKERTYWYFVHWILGTIISFVGIINIYTGLKAYHKRTLKSTTLWTILFTAQVSFIALIYLLQDKMEYIKKQRVIPGTESTEPSDQDIPHLQNQNELLPVVACGKKKNALSNLFDQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1540 443 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Lele16g1540 443 SMART 561_7 233 358 IPR006593 -
Lele16g1540 443 FunFam 60S ribosomal protein L18a 1 71 - -
Lele16g1540 443 ProSiteProfiles Cytochrome b561 domain profile. 189 397 IPR006593 -
Lele16g1540 443 PANTHER 60S RIBOSOMAL PROTEIN L18A 3 177 IPR028877 -
Lele16g1540 443 Pfam Eukaryotic cytochrome b561 233 359 IPR006593 -
Lele16g1540 443 Gene3D - 1 70 - -
Lele16g1540 443 SUPERFAMILY RplX-like 71 146 - -
Lele16g1540 443 Gene3D - 71 143 - -
Lele16g1540 443 Gene3D - 184 397 - -
Lele16g1540 443 CDD Cyt_b561_FRRS1_like 209 391 - -
Lele16g1540 443 FunFam 60S ribosomal protein L18a 72 147 - -
Lele16g1540 443 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1540 Lele-ChrLele16 8926621 8931193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1540 1 176 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 89.205 2.18e-117 340
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1540 16 8926621 8931193 Lele16g1540 16 8926621 8931193 ECH
Lele13g0956 13 20762801 20768591 Lele16g1540 16 8926621 8931193 hybridization
Lele14g0850 14 19156161 19160732 Lele16g1540 16 8926621 8931193 hybridization