Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1539 ATGGACCATAAAGGCCACGCTCAAAGGCCAATAAGGTTACAGAACATGGGCTTAGAAAGCTTCCACACAACGCCCCACCACGAGGTTAACCTGCAAGGCCCTTCTGCAAATTTCATTCTCTTTCTCCAAAACCCTAGCCCGGGATCCTCTTTTATATGGGGAGATCAAAAGCAGCCTACCCTCCCCCTTAACCGGTCTCTGAACGAGCAAAAGCAGCAGCGCCTCCTCAACCTCAACCTCAACCCTAGAGTCCGACCTCGCTGTCTTGCAACCATGTCAAGGAGAAAGGTTAGAGAGCCAAAGGAGGAGAATGTTACTCTTGGCCCAACTGTAAGAGATGGTGAACATGTTTTAGGTGTAGCCCATATTTATGCATCATTTAACGACACCTTCATTCACGTGACTGATTTGTCTGGGAGAGAAACCCTTGTCCGCATCACTGGTGGAATGAAGGTTAAAGCTGACAGAGACGAGTCTTCCCCATATGCTGCTATGCTGGCTGCACAGGACGTATCTGCTAGATGCAAGGAACTTGGCATCACTGCTCTTCATATCAAGCTCCGGGCCACTGGTGGAAACAAGACAAAAACACCCGGTCCTGGTGCTCAGTCTGCTCTCCGTGCCCTTGCTCGTTCTGGAATGAAAATTGGTCGTATAGAGGATGTAACTCCAATTCCTTCTGATAGCACTCGCAGAAAGGGTGGTAGAAGAGGTAGAAGGCTTTAA 726 0.4904 MDHKGHAQRPIRLQNMGLESFHTTPHHEVNLQGPSANFILFLQNPSPGSSFIWGDQKQPTLPLNRSLNEQKQQRLLNLNLNPRVRPRCLATMSRRKVREPKEENVTLGPTVRDGEHVLGVAHIYASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1539 241 MobiDBLite consensus disorder prediction 221 241 - -
Lele16g1539 241 Hamap 30S ribosomal protein S11 [rpsK]. 71 238 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lele16g1539 241 SUPERFAMILY Translational machinery components 114 239 - -
Lele16g1539 241 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 94 236 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lele16g1539 241 FunFam 40S ribosomal protein S14 92 241 - -
Lele16g1539 241 ProSitePatterns Ribosomal protein S11 signature. 206 228 IPR018102 -
Lele16g1539 241 Gene3D Ribosomal protein S11 92 241 IPR036967 GO:0003735|GO:0005840|GO:0006412
Lele16g1539 241 Pfam Ribosomal protein S11 119 237 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1539 Lele-ChrLele16 8923164 8925211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1539 92 230 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 88.489 1.05e-89 259