Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1507 ATGCTGAAAGAAGGCAACGGCAATGGCGTCACCAGTAATAACAGCAGGGCACGTATCTGTGACACGTGCCGCTCTGCTCCCTGCACTGTCTACTGCCGCGCCGACATGGCTTACCTCTGCAACGGTTGCGACGCCCGCATCCACGCCGCCAACCTCGTCTCCTCCCGCCACGAGCGCGTCTGGGTCTGCGAGGCCTGTGAACGCGCCCCCGCTGCGTTTCTCTGCAAAGCCGACGCCGCCTCCCTCTGCTCCGCCTGCGACGCCGACATCCACTCCGCCAACCCCCTCGCCAGCCGTCACCACCGCGTCCCCATTCTCCCCTTCTACGGGCCTCCTTCCGCGGGGTCTGCTCCTGATGAGGATGATGGTTTTCTAGCTCTTGGAGGCGACGAGGCGGCGGAGGAGGAGGTTGTGGACGAAGAGGACGAAGACGAGGCCGCCTCCTGGTTGTTGCTGAATCCTGTGAAGAACAACAACTCCATTAACAACAACAATCAGAGCAATGGGTTTTTGTTCGGTTCTGGGGAGGTTGATGATTATTTGGACCTCATGGATTGCAATTCATGTGCCGATAATCAGTTGACCGATCATTACAATCAGCAGCAACATTATGGTGTTCCTCAGAAGAACTATGTCGGCGACAGTGTCGTCAAGGTTCAGCAGCCGCCGCCGCCTTTTCAGTTGGGTTTGGACTTCGATTCGTCAAAAGCTGGCTACAGTGCTTTCAACGGTTCTGTTACTCAAAATGTTTCGATTTCGTCAATAGATGTTGGCATTGTACCGGAATCAACTATCAGCGATGGCTCGATTTCTCAGTCAAGACCTCCAAAAGGGACAATTGACCTATTTTCTGGGCATCCAATTCAGATACCTTTGCAGCTGAGTCCGATTGACAGGGAAGCTAGGGTGTTAAGATACAGGGAGAAGAAGAAGACGAGAAAGTTTGAGAAGACAATAAGGTATGCGTCTCGGAAGGCATATGCAGAGACCAGACCTCGTATCAAAGGTCGATTTGCAAAGAGAACAGAGGTGGAAGCTGAAGTGGACCAGATGTTTTCTACTTCTCTAATGACGGAAACCGGATATGGCATTGTTCCTTCTTTCTGA 1107 0.5285 MLKEGNGNGVTSNNSRARICDTCRSAPCTVYCRADMAYLCNGCDARIHAANLVSSRHERVWVCEACERAPAAFLCKADAASLCSACDADIHSANPLASRHHRVPILPFYGPPSAGSAPDEDDGFLALGGDEAAEEEVVDEEDEDEAASWLLLNPVKNNNSINNNNQSNGFLFGSGEVDDYLDLMDCNSCADNQLTDHYNQQQHYGVPQKNYVGDSVVKVQQPPPPFQLGLDFDSSKAGYSAFNGSVTQNVSISSIDVGIVPESTISDGSISQSRPPKGTIDLFSGHPIQIPLQLSPIDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEAEVDQMFSTSLMTETGYGIVPSF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1507 368 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Lele16g1507 368 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Lele16g1507 368 CDD Bbox1_BBX-like 62 105 - -
Lele16g1507 368 Pfam CCT motif 299 341 IPR010402 GO:0005515
Lele16g1507 368 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Lele16g1507 368 CDD Bbox1_BBX-like 19 62 - -
Lele16g1507 368 ProSiteProfiles CCT domain profile. 299 341 IPR010402 GO:0005515
Lele16g1507 368 SMART bboxneu5 63 105 IPR000315 GO:0008270
Lele16g1507 368 SMART bboxneu5 15 62 IPR000315 GO:0008270
Lele16g1507 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 356 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1507 Lele-ChrLele16 8667405 8669145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1507 1 368 C2C2-CO-like Transcription Factor Family AT3G02380 56.464 1.14e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele16g1507 zf-B_box 4.6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0989 13 21062499 21064408 Lele16g1507 16 8667405 8669145 hybridization
Lele14g0885 14 19434948 19436707 Lele16g1507 16 8667405 8669145 hybridization