Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1497 ATGGCCAATAACTCTCAACTGCCATCCCTGTTTTCCCTCGAAGATGAATTTGAAGAATCAGGCCCTGATGAAGAGGTATCTGATCTCCCATCACCGACTGCCCACGATCACTGGTGCCCCGATTCCTCCAACCCCTTTGCAACCGTGTCCTTCGACCATTTGAGCAACCATTCAAACTGGTACTCCGATTCGGACTCTGATTCGGTGAGTTGCTTTGTTACAGATCTTTTTCAAAATCGCTCGTCGGGGAACTTTTACCTTCGCGGTAACGATAGTTCTGGTATTAATCCCTTTTCGGCCGTTCCTTGCGATGGTCACGGTGGAGAAGGGTCAAGTTATGCGGAGACGGAATTAGGGTCTGGGTTTGGAACGGGAAAAAATGTTGGAATTTCTGCAGTAGGCGAGACATCGGGCTCTGAAAGGGTTCGTTCGCACACGGATGGGCTTCGAATTGTCGGGTTTAGTTCTGTGTCGGATTCAAATACTGATGAAGAGCTTGATAGGGCTATAGAATTCAGTGCTGGTGAAAATGATGGCAATAGAATCAGTGGCTTTGACGATTTTGATGTTCATTTTTGTTGGGACAGCCTTTGCTTGGAGGATCAGAGGACCCTCAATGAACATTTTGAGTGGGAGGATTTAGAGGAGAGAGTCAATGATGGAGAAGACTTGAGCGTGGTGATTGGTGAGGTTGATGATCAATCAGTAGCATCTGGATTTTCCTATGGGGAAGAGTCGGGTGAAGAGGCATTGAGATACCTTGAATGGGAAATTCTGTTAGCGGTCAACAATTTAGAGAGGAATTCAAGCTTGGATCATGGCGCCACTGAAGGTTCCTTCTTAACGGTTCAGGATGATGGTATGGACACAGCTGAGTATGATATATTTTTTGGGCAATTCCTGGAAAATGAGAGTTCCTTAAAAGGCAGTCCTCCTACCGCTAAAAGTGTTATGGAGAATCTTCCTTTAGTAGAATTGACAGAGAAGGACTTGGTGGGGGAGAATGTAGCTTGTGCTGTTTGCAAAGATGAAATCATATGGAAGGAAAAAGTGAGAAGGCTTCCCTGCTCGCACTTTTACCATGGGGACTGCATTATGCCATGGTTGAGCATTCGCAATACATGCCCTGTTTGTCGGTTTGAACTGCCCACAGATGATGCCGATTATGAGCAGAGGAAGAGTCAGAGAACTGCTCATGAATCAGCTCATGATATGTTGGAGTTTTCACTGTAG 1233 0.4582 MANNSQLPSLFSLEDEFEESGPDEEVSDLPSPTAHDHWCPDSSNPFATVSFDHLSNHSNWYSDSDSDSVSCFVTDLFQNRSSGNFYLRGNDSSGINPFSAVPCDGHGGEGSSYAETELGSGFGTGKNVGISAVGETSGSERVRSHTDGLRIVGFSSVSDSNTDEELDRAIEFSAGENDGNRISGFDDFDVHFCWDSLCLEDQRTLNEHFEWEDLEERVNDGEDLSVVIGEVDDQSVASGFSYGEESGEEALRYLEWEILLAVNNLERNSSLDHGATEGSFLTVQDDGMDTAEYDIFFGQFLENESSLKGSPPTAKSVMENLPLVELTEKDLVGENVACAVCKDEIIWKEKVRRLPCSHFYHGDCIMPWLSIRNTCPVCRFELPTDDADYEQRKSQRTAHESAHDMLEFSL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1497 410 Pfam Ring finger domain 338 379 IPR001841 -
Lele16g1497 410 SUPERFAMILY RING/U-box 319 385 - -
Lele16g1497 410 MobiDBLite consensus disorder prediction 1 35 - -
Lele16g1497 410 CDD RING-H2_RNF126_like 338 379 - -
Lele16g1497 410 SMART ring_2 338 378 IPR001841 -
Lele16g1497 410 ProSiteProfiles Zinc finger RING-type profile. 338 379 IPR001841 -
Lele16g1497 410 FunFam E3 ubiquitin-protein ligase RING1-like 299 385 - -
Lele16g1497 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 225 383 - -
Lele16g1497 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 385 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1497 Lele-ChrLele16 8620780 8622012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1497 256 393 C3H Transcription Factor Family AT5G15820 50.725 3.00e-44 155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0997 13 21107589 21117642 Lele16g1497 16 8620780 8622012 hybridization
Lele14g0894 14 19488022 19492742 Lele16g1497 16 8620780 8622012 hybridization