Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1489 ATGGGTTCTGTTTGTTGTTGTTTGAGTGCTGATGAATTTGAAGATTATGTAAATCAAAATAGTTCTGTATATAGGAATTGTGTGTGTCTCAATTGCTTCTTACAGAACTTTTTGAATGCGTATACAGCAATATTCCACAGAGGGGAAGTGCATTCGCTTCCTTCATCTATACAGGGGGCAGCTTCTATGACTTCTGCAGCATCACTTGATAATTCACTAACTGACATGTACCATTCTCCTCCAAGGCCCTTGCCATATGATGTAGACCCTAGGCATTTCCTCTCACGTGATTTATTCATTTCAAGACATGACAAAGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATTTAGATGGGGATCAAGAATCTTTAGATTCAGGAGGCAAACGTAATGAATCTTCCTGTGAAGATGCATCAAAGGAATACAAATCCAAGTCCTCAGTAAGGCTCTCATCAGCAAAATGTACAACTGGAGCTGGGCTTGCTTATGCATCATCTGAGGAGGAGGATGTTTGCCCAACTTGTCTTGAAGAATACACTGAAGAGAACCCAAGGATATTGACTAAGTGCAATCATCATTTCCATCTAAGTTGCATTTACGAATGGATGGAGAGAAGTGAAAACTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACAACTTAA 681 0.3994 MGSVCCCLSADEFEDYVNQNSSVYRNCVCLNCFLQNFLNAYTAIFHRGEVHSLPSSIQGAASMTSAASLDNSLTDMYHSPPRPLPYDVDPRHFLSRDLFISRHDKGSSHLNEESEPLRGDLDGDQESLDSGGKRNESSCEDASKEYKSKSSVRLSSAKCTTGAGLAYASSEEEDVCPTCLEEYTEENPRILTKCNHHFHLSCIYEWMERSENCPVCGKVMVFDETT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1489 226 Pfam RING-H2 zinc finger domain 170 216 IPR024766 GO:0008270
Lele16g1489 226 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
Lele16g1489 226 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 224 - -
Lele16g1489 226 SUPERFAMILY RING/U-box 171 223 - -
Lele16g1489 226 FunFam E3 ubiquitin-protein ligase At3g02290-like 153 223 - -
Lele16g1489 226 MobiDBLite consensus disorder prediction 105 142 - -
Lele16g1489 226 SMART ring_2 176 216 IPR001841 -
Lele16g1489 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 226 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1489 Lele-ChrLele16 8552112 8555055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1489 1 224 C3H Transcription Factor Family AT5G38895 56.889 1.37e-93 276