Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1487 ATGTCCTTCCCTGGTCCCACCCACTCCACGCTCGACAACGCATTGTACTGTAGAAGAAACAAGGAAGGAGCTAGCAGCAAGATGGGGAGAGGTAGGGTTCAGTTGAAGCGGATCGAGAACAGTTCGAGTAGGCACGTCACGTTCTCAAAGCGCAAAACCGGGCTGCTTAAGAAAGCCAATGAAATCTCAGTCCTCTGCGATGCTCAGGTCGCTTTGATTGTCTTCAACGGCAAGGGCAAGCTCACTGAGTTTAACTCTCAATCCTCCAGCATGGATAGCATTCTGGAGCGATATGAGAGATGTTCGCACTCAGAGCAACTTTCTGGAACTAACAACGATTCCCAGGGAAACTTATCTTTGGAGTTATTCAAGCTCACTACTAGAGCTGAAGTTTTACAGAAGAACATCAAGAATTATGAAGGAGAGGATCTGGATCCCTTGAGTTTGAAGGAGCTTCAGAGTCTGGAGCACCAGCTTGAGAATGCTCTAAGGCGCATCCGAACGAAAAAGAATCAAATCATGATGGAAACCATCTCAGAGAAGCATAAAAAGGAAAAGGTATTGAAGGATCACAACAACATGCTAGCAAAGAAGGAGAAGGAAAAGGAGAAGTCGATGACAAATGCCGTCAGCAGCGGAAGTAGGCAGGAAACTCTACCCCAATATCAGTTCAACTTTCACGTTTCTACACCGCAGCTGCTGCTGCCACCACCACCTACTCTAACTCTTGGTGGGACTTGTGAAGGAGGAGGAGCGCTAGCCATGGTGGAGGGGGACGATGAAGCTGAAGCTGGTCCCAGTAACAACATCGTATTGCCACCCTGGATGATATTTCATATGACTAGTTAG 849 0.4747 MSFPGPTHSTLDNALYCRRNKEGASSKMGRGRVQLKRIENSSSRHVTFSKRKTGLLKKANEISVLCDAQVALIVFNGKGKLTEFNSQSSSMDSILERYERCSHSEQLSGTNNDSQGNLSLELFKLTTRAEVLQKNIKNYEGEDLDPLSLKELQSLEHQLENALRRIRTKKNQIMMETISEKHKKEKVLKDHNNMLAKKEKEKEKSMTNAVSSGSRQETLPQYQFNFHVSTPQLLLPPPPTLTLGGTCEGGGALAMVEGDDEAEAGPSNNIVLPPWMIFHMTS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1487 282 Gene3D - 40 113 IPR036879 GO:0003677|GO:0046983
Lele16g1487 282 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Lele16g1487 282 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Lele16g1487 282 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Lele16g1487 282 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Lele16g1487 282 PANTHER SERUM RESPONSE FACTOR HOMOLOG 28 193 - -
Lele16g1487 282 Coils Coil 122 142 - -
Lele16g1487 282 Coils Coil 181 208 - -
Lele16g1487 282 FunFam MADS-box transcription factor MADS-MC 40 114 - -
Lele16g1487 282 ProSiteProfiles K-box domain profile. 115 205 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele16g1487 282 CDD MADS_MEF2_like 29 104 IPR033896 GO:0000977|GO:0045944
Lele16g1487 282 Pfam K-box region 112 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele16g1487 282 ProSiteProfiles MADS-box domain profile. 28 88 IPR002100 GO:0003677|GO:0046983
Lele16g1487 282 ProSitePatterns MADS-box domain signature. 30 84 IPR002100 GO:0003677|GO:0046983
Lele16g1487 282 SUPERFAMILY SRF-like 29 108 IPR036879 GO:0003677|GO:0046983
Lele16g1487 282 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 84 IPR002100 GO:0003677|GO:0046983
Lele16g1487 282 Coils Coil 149 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1487 Lele-ChrLele16 8538090 8544352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1487 28 271 MADS-box Gene Family AT1G26310 44.622 7.08e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele16g1487 K-box 1e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1008 13 21183367 21195955 Lele16g1487 16 8538090 8544352 hybridization