Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1485 ATGGTAGCTACGATGATCATGAGTTCAGAGAAAGCATGGAAGAAAGGGCCTTGGACTCTTGAAGAGGATAAGCTGCTTAGTGAATACGTGAGCTTGCATGGTGAAGGGAGGTGGAGTTCAATGGCCAAGTTTACAGGGTTAAATAGGAATGGGAAAAGTTGCAGGTTGAGGTGGGTGAACTATTTGAAGCCAGGGTTGAAGAAAGGCCACTTAACACCTCAAGAAGAAGCTATCATATTTGAAATCCATGCTATGCTGGGTAACAAGTGGTCTACAATAGCAAAATATTTGCCGGATAGAACAGACAATGAGATTAAGAACTACTGGAGAACTCACTTCAAGAAGAAAGACAAATCCACTCGTACTAATAAGAAGCAAGAGAAGAGAAGATCGAGAATTCTAGAACAGATGAAACAACAAGAGCAGCAGCAACAACGACAACTTCATCAGTACGATGTACAAAGCAGCATGTCGTCTCATGCAGAGTCAAACAATCAAACAAACGTTTCTGCTGATGAGACTGTTCTAGAAGACAACTACCATCCAGTTACAACCATGGAAGACCAACATAATTACTTGATGCCTTTCATGTACCAAGATTACTTTCCATCCCCGTGGCCTGAAAATACTGTAGAACAAGATGAAGGCTTGTTGGTTACGTTATGGAACCTTGACGAAGAAACAGTACAAGCTCATCACGGGGACAATATTCAGTTCAACGAAAATTCCATTCATCATAACCAAATTACAACTTCTTGTTTCGATGACATTTTCAACAACCTCTGCTTTGAAACATACATGTCCAGCTGA 810 0.4086 MVATMIMSSEKAWKKGPWTLEEDKLLSEYVSLHGEGRWSSMAKFTGLNRNGKSCRLRWVNYLKPGLKKGHLTPQEEAIIFEIHAMLGNKWSTIAKYLPDRTDNEIKNYWRTHFKKKDKSTRTNKKQEKRRSRILEQMKQQEQQQQRQLHQYDVQSSMSSHAESNNQTNVSADETVLEDNYHPVTTMEDQHNYLMPFMYQDYFPSPWPENTVEQDEGLLVTLWNLDEETVQAHHGDNIQFNENSIHHNQITTSCFDDIFNNLCFETYMSS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1485 269 MobiDBLite consensus disorder prediction 115 172 - -
Lele16g1485 269 Gene3D - 14 67 - -
Lele16g1485 269 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Lele16g1485 269 Pfam Myb-like DNA-binding domain 71 112 IPR001005 -
Lele16g1485 269 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lele16g1485 269 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele16g1485 269 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lele16g1485 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele16g1485 269 CDD SANT 72 113 IPR001005 -
Lele16g1485 269 FunFam Myb transcription factor 15 67 - -
Lele16g1485 269 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 179 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele16g1485 269 MobiDBLite consensus disorder prediction 137 172 - -
Lele16g1485 269 CDD SANT 17 62 IPR001005 -
Lele16g1485 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Lele16g1485 269 Coils Coil 123 154 - -
Lele16g1485 269 SMART sant 14 64 IPR001005 -
Lele16g1485 269 SMART sant 67 115 IPR001005 -
Lele16g1485 269 Gene3D - 71 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1485 Lele-ChrLele16 8519665 8520697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1485 14 244 MYB Transcription Factor Family AT3G30210 48.927 8.84e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele16g1485 Myb_DNA-binding 1.7e-15 CL0123