Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1478 ATGGAAGTGTTTAGTTGGCTGCTAGATAAAACTAAATTCTATGTTGTAGGAGCTGGACTCTTTACAGGCGTCACATTGGCACTCTACCCAGTTTCTGTAGTGAAGACTAGACTTCACGTTGCGTCGAGGGATCCTGCAGAGAGAAATGCATTTTCTGTTATAAAAGGATTACTTACAACAGATGGCGTTCCCGGTCTGTATAGAGGATTTGGCACAGTCATCACTGGTGCAATTCCTTCCAGAATCATATTTCTTACTACCCTAGAGACCACTAAGTTGGCCGGCTTCGGGAAGGTGAGCCAAAAGTTGATGGTGCAAGGGTACTCAGGTCATGCTCAATATAATGGCAGTCTGGATGTTGCTCGTAAAGTGTTAACATTAGATGGCATCAGGAGATTATATAAAGGATTCAGTCTTTCTGTTATGACTTATGCTCCTTCTAGTGCTGTATGGTGGGCAAGCTATGGTTCAAGCCAACGCTTAATTTGGAGATTCTTGGAACATAAAGCTGAAAATAAGGAAGGAAAACCCCGTGTGCAGAAGATCGTGTTAGTTCAGGCTACTGGGGCAATCTTTGCTGGTGCAACTGCATCCTGCATTACAACACCATTGGATACTATTAAGACACGATTACAGGTGATCGGACATGAAAATAAAAGCTCTATGAAACAAGTTGTCAAAGACTTGATAAACGAGGATGGTTGGAAAGGTTTATACAGAGGAGCGCTTGTGTGCAAAAGATCAATAGACAGACGCAAACGGTTCACCTCATCTTCACCCAAGATTTGGAATAATGTTGAATAA 804 0.4229 MEVFSWLLDKTKFYVVGAGLFTGVTLALYPVSVVKTRLHVASRDPAERNAFSVIKGLLTTDGVPGLYRGFGTVITGAIPSRIIFLTTLETTKLAGFGKVSQKLMVQGYSGHAQYNGSLDVARKVLTLDGIRRLYKGFSLSVMTYAPSSAVWWASYGSSQRLIWRFLEHKAENKEGKPRVQKIVLVQATGAIFAGATASCITTPLDTIKTRLQVIGHENKSSMKQVVKDLINEDGWKGLYRGALVCKRSIDRRKRFTSSSPKIWNNVE 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1478 267 Pfam Mitochondrial carrier protein 187 243 IPR018108 -
Lele16g1478 267 Pfam Mitochondrial carrier protein 102 162 IPR018108 -
Lele16g1478 267 Pfam Mitochondrial carrier protein 18 92 IPR018108 -
Lele16g1478 267 ProSiteProfiles Solute carrier (Solcar) repeat profile. 181 266 IPR018108 -
Lele16g1478 267 Gene3D Mitochondrial carrier domain 10 97 IPR023395 -
Lele16g1478 267 Gene3D Mitochondrial carrier domain 98 246 IPR023395 -
Lele16g1478 267 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 99 242 - -
Lele16g1478 267 SUPERFAMILY Mitochondrial carrier 9 244 IPR023395 -
Lele16g1478 267 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 94 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1478 Lele-ChrLele16 8462101 8465163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1478 3 241 Chloroplast and Mitochondria Gene Families AT5G15640 61.733 1.30e-114 330
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1018 13 21264451 21267640 Lele16g1478 16 8462101 8465163 hybridization
Lele14g0916 14 19656400 19659375 Lele16g1478 16 8462101 8465163 hybridization