Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1459 ATGTCCTCTGGAAAGAATCTAACGGTTCAGATTGGATGTGCCAAAGCCCCAAGCCCTGGTCCGCGGGTGATTAGTGGCAAGGGTTTTTCGCCCTTCAGAGTTCAGGCTCTTCGAAGTGAAAATCGCAGAACTATCGCGAAGCAGAGAGAACGACAGAGATCTGCACTCGCTCCTACAAGGCTACAAGTGGCCTCTCTACATATAACGATTGGAAAGCTTCTCAAGCATTCTGCTGTGAAATGCATCAGCCCAGAATTTTCTGCTTCCACTCCATCAATTTACCAGGCAATTAGGTCCATGTCATCTGCAAAGCTTTTTATTGGAGGTGTTTCATATAACACAGATGATATGGGTCTAAGAGAAGCCTTCTCTCGCTATGGAGAGATAATTGATGCAAGGGTAATTATGGATCGTGAGACAGGAAGGTCCAGAGGATTTGCGTTCGTAACTTTTGCATCAAGTGAGGAGGCATCTGCTGCTATGCAGGCTATGGATGGTCAGGATCTTAATGGTAGGAGGATACGGGTTAACCATGCTACAGAGAGGTCGCGACCAGGCTTTGGTGCTGGCAATTATGGTGGAGGCGGCTATGGTGGAAGTAACTATGGAGGTGATAATAACTATAGGAATCCAAGTTATGGAAGCAGTGGTGTTGGTTTTGGGGGCAGTGGAAATTATGGTGTTCCTGATGGTGCTGGGGGCAGTAATTACCAATTCAATCAAAACTCTGGTGGAGATCTTGGCTTTGAACCAAGTGGCAATTCAAGTATGGGAGATGATGGTGGCCAATTCGGTTGCAACCAAAATGAAGGAACTGGCTTAGACGATGAAGATCATTTGAGAGAGAACAACGATGAAGACAACTTGAGAGAGAGCCGGTAG 882 0.4637 MSSGKNLTVQIGCAKAPSPGPRVISGKGFSPFRVQALRSENRRTIAKQRERQRSALAPTRLQVASLHITIGKLLKHSAVKCISPEFSASTPSIYQAIRSMSSAKLFIGGVSYNTDDMGLREAFSRYGEIIDARVIMDRETGRSRGFAFVTFASSEEASAAMQAMDGQDLNGRRIRVNHATERSRPGFGAGNYGGGGYGGSNYGGDNNYRNPSYGSSGVGFGGSGNYGVPDGAGGSNYQFNQNSGGDLGFEPSGNSSMGDDGGQFGCNQNEGTGLDDEDHLRENNDEDNLRESR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1459 293 SUPERFAMILY RNA-binding domain, RBD 88 210 IPR035979 GO:0003676
Lele16g1459 293 MobiDBLite consensus disorder prediction 232 293 - -
Lele16g1459 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Lele16g1459 293 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 42 260 - -
Lele16g1459 293 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 75 205 - -
Lele16g1459 293 SMART rrm1_1 104 177 IPR000504 GO:0003723
Lele16g1459 293 Gene3D - 95 245 IPR012677 -
Lele16g1459 293 MobiDBLite consensus disorder prediction 272 293 - -
Lele16g1459 293 MobiDBLite consensus disorder prediction 234 270 - -
Lele16g1459 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 175 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1459 Lele-ChrLele16 8334100 8336718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1459 61 182 Eukaryotic Initiation Factors Gene Family AT3G16380 32.520 7.60e-11 60.5