Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1453 ATGGCAACTGCGAGAACCGTGAAGGACGTTTCACCGCATGAGTTCGTCAAGGCTTACTCAGCTCACCTCAAGCGTTCTGGCAAGATGGAGCTTCCTGAGTGGACGGATTTAGTAAAAACTGCAAGATTCAAAGAACTTGCCCCATATGATCCTGACTGGTATTATGTTAGAGCTGCCTCCGTGGCAAGAAAGATCTACTTGAGAGGTGGTCTTGGTGTTGGTGCCTTTCAAAGAATTTATGGTGGAAGCCAGAGGAATGGAAGCCGCCCCCCACATTTCTGCAAGAGCAGTGGAGCCATTGCCAGACACATTCTTCAGCAGTTGCAAAACATGAACATTATTGAGCTTGATCCAAAAGGTGGTAGGAAAATCACTTCAAGTGGTCAAAGGGATCTTGACCAAGTTGCTGGCCGAATTGTGGTTGCACCTTGA 432 0.4745 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDLVKTARFKELAPYDPDWYYVRAASVARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQNMNIIELDPKGGRKITSSGQRDLDQVAGRIVVAP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1453 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lele16g1453 143 PANTHER 40S RIBOSOMAL PROTEIN S19 2 139 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele16g1453 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele16g1453 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele16g1453 143 FunFam 40S ribosomal protein S19 2 143 - -
Lele16g1453 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Lele16g1453 143 Gene3D - 1 142 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1453 Lele-ChrLele16 8286002 8287647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1453 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 84.507 2.41e-92 262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1042 13 21421423 21423009 Lele16g1453 16 8286002 8287647 hybridization
Lele14g0942 14 19830216 19831053 Lele16g1453 16 8286002 8287647 hybridization