Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1450 ATGGACTACACCACTGTGCCTGAATTGAAGCCTAATCCAACGCCAGCGTCCCTTTCTTCTTATCATCCTTCTGTAGCCGCTTATTTTCCCGCATCTTACCATCTCCATTACCAATTATACATTCAAAACCCTAATCCTTCTTCTGCAGACCCTCAATCGTCTACTGTAACTCAAGAATTTTATGGTGGCACGGGCGCGGAACCTGTGGTGAACCCTCCTGGTGTTGCTTCCTATGCCCCCTTGACGTCCGGTTCAGTTAGCCATCTGACTCATGAAGCCCACGTTGATTACTCATATGCTCACAACCCTATTGCAGATTCGAGATCCGGATACTATTTTGACCCGAATGCTCAGAATTGGGCTGCTAGGGAGGCTGTTAAGCAGTTCGGGGTGGACCCGGTTGGCTATGTAGCTGCTATCCCTGTGGCTCCTACTGGATTAGAGCAATTGGCTACTACTGCAAATGCTAACTACTGGTGGGCTCACGCCACAACCCAACCTCATGGAAATGGGGCACGGAAGAACCCCCCGAAGAAGAAACCAAAAACTAAGGCTGTCCAATCTGCATATTGTGAAGTTTGCAAGATAGATTGTACCACCAAGGATGTTCTGGACCAGCATAAGTTAGGAAAGAAGCACAAGAAGAACTTGGAGAAATTAAAAGAAGCATTAAGGCAGCCACAAGTTCTTGTTCCACCCGCAGCGTCATCTAATCCTGTGATTGGACCTCAACCGGAGGGAACCAAGAGCAAATCTGGGAGCAAGAGTAAAAGGAAAGCGATTGAGACACCAGAAGGTTTGGAGAAGAAGAAAAAGAAGGTTCTTGAAGGTGGGGCAGCCGCAGAAGCGGTTAAAATATGCACTATTTGTAATGTGGTCTGTAATAGCGAGACTGTATTTAATTATCATCTTGCAGGGCAAAAGCATGCTGCTATGATGAAGAAACAAGCTTCTTGA 957 0.466 MDYTTVPELKPNPTPASLSSYHPSVAAYFPASYHLHYQLYIQNPNPSSADPQSSTVTQEFYGGTGAEPVVNPPGVASYAPLTSGSVSHLTHEAHVDYSYAHNPIADSRSGYYFDPNAQNWAAREAVKQFGVDPVGYVAAIPVAPTGLEQLATTANANYWWAHATTQPHGNGARKNPPKKKPKTKAVQSAYCEVCKIDCTTKDVLDQHKLGKKHKKNLEKLKEALRQPQVLVPPAASSNPVIGPQPEGTKSKSGSKSKRKAIETPEGLEKKKKKVLEGGAAAEAVKICTICNVVCNSETVFNYHLAGQKHAAMMKKQAS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1450 318 Gene3D Classic Zinc Finger 172 220 - -
Lele16g1450 318 Gene3D Classic Zinc Finger 265 317 - -
Lele16g1450 318 SMART c2h2final6 285 309 IPR013087 -
Lele16g1450 318 SMART c2h2final6 189 213 IPR013087 -
Lele16g1450 318 MobiDBLite consensus disorder prediction 251 265 - -
Lele16g1450 318 PANTHER ZINC FINGER PROTEIN 385B-LIKE 115 317 - -
Lele16g1450 318 Pfam Zinc-finger of C2H2 type 286 309 - -
Lele16g1450 318 Pfam Zinc-finger of C2H2 type 190 213 - -
Lele16g1450 318 SUPERFAMILY beta-beta-alpha zinc fingers 283 316 IPR036236 -
Lele16g1450 318 SUPERFAMILY beta-beta-alpha zinc fingers 165 221 IPR036236 -
Lele16g1450 318 SMART ZnF_U1_5 186 220 IPR003604 GO:0003676|GO:0008270
Lele16g1450 318 SMART ZnF_U1_5 282 316 IPR003604 GO:0003676|GO:0008270
Lele16g1450 318 MobiDBLite consensus disorder prediction 224 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1450 Lele-ChrLele16 8272887 8275234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1450 186 313 C2H2 Transcription Factor Family AT5G61190 35.878 3.72e-15 74.3