Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1436 ATGGGTTGCATTAACTCCAAAAATGCGGTGGCCGGAGATTCACCCGGGCACCGGAAGGAGCGCACCGACAATGTGTCCGCAATTGTGGATCCTCCGTCCAAATCCCGAAGGGTGATGTTAGCTTCTGCCGATAAAGGGGATCAAAAATTGGAGGAGAGCAATCGAGATGGGAAGAAGTCCGGGAAGGATGGTTCCAAAGGAAGCGGGAATTTCAGTCTCAAATTGGGGATTTCGCATCGGTTCGTGGAAGCGGAGCTGAATGCGGCTGGATGGCCCCCTTGGCTCACAGCTGCTGCGGGCGAAGCTATTCATGGATGGGTGCCCCTCAGAGCAGATTCTTTTGAGAAATTAGAGAAGATTGGGCAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAGATTGTTTGCCCTGAAGAAGGTGCGGTTTGACAATTTTCAGCCAGAGAGCGTGAGGTTCATGTCAAGAGAAATTACAATTCTTCGCAGGCTTGACCATCCAAACATTATGAAATTGGAGGGTGTAATTACATCCCGACTATCAAGTAGTTTATACCTTGTGTTTGAATATATGGAGCATGATCTTGCGGGACTAGTATCTTGTCCTGACATAACGTTCAGCGATTCACAGGTGAAATGTTACATGAGGCAACTACTGAGTGGACTTGAGCACTGTCACCTACGGGGTATCATGCATCGAGACATTAAAGTATCCAATATATTAGTAAATAATGATGGTATACTCAAGATGGGCGATTTTGGATTGGCGAATATAATTAGCCCCAGTAACAAGCATCCATTAACCAGTCGCGTAGTGACTCTATGGTACCGTCCTCCTGAACTCTTGATGGGATCAACTAACTATGGAGTATCAATGGATCTATGGAGTGTGGGTTGTGTATTTGCAGAATTTTTTCTGGGCAAACCTATCCTCAAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTTAAGCTTTGCGGTTCACCTCCTGATGAATTCTGGAAAAAGTGCAAGCTTCCTCATGCAACAATGTTTAAACCTCAGATTACTTACGAAGGCTCCTTTTCTGAGAGGTTTCCAGATATTCTAGAAACTGCTCTAAACCTAATGAAGACTCTACTATCCATTGATCCCCATGAGCGTGGGACTGCCTCTTCTGCTCTGATGTCTGAGTATTTTAGCACCAAGCCGTTTGCTTGTGATCCATCCAGCATGCCAAAATATCCACCCAACAAAGAAATGGATGCTAAAAATCGGGAAGAGGTTCGCAGGAAAAAGGCAGGTAAAGTGCATGAGGCCGCGACATCAAGAAAGCAAAGACGAGCCCGTAAAGTTTTACAAGAACCAAACAATTTCAATAACCCAGCTTCAACTGATGAAAAGCAGAACATTTCTCAAAAAGCTGTTAAAGACGATGTTAAATCAAATCCTAACAAGGGAAAAAGAGGAGCTATGCAGAAGGAGCCATCAAAGCCTTCAATGGAAGCAATGTCAGAGACCTCCCAGATCAATGGCGTACCTCATCGCTTTAGTATATTAGCAGGACCAGTACCAGCCTCAGGTGCTAGTGGCTTTGCATGGGCAAAAAGAAGAAAACCAGAGGTTTCATCCACATTATCAGATGGTTCAAAAAGCAAAATTAGCGCACTGGATCCAAGCTTTGCAAAAGGCACATATGATTTAAGCAGACATTTGATCGATGTCGCAGAAAAAAAACATAAGGACAATACAGGCCATCATGCTCACCATGGTCAACCGAGATATAGTGATGCATCTGATACATGTTCAAATTTAGCAACGATTTTTGATCCCACGGAAACACTAGATGGTGTGTTGAATACTCCGGGCCACAAAAATCTTGGCAATGAAAGCGCACGCCATGTAGCCGGGAAATCAAGGTTAGGAAGATAA 1926 0.4434 MGCINSKNAVAGDSPGHRKERTDNVSAIVDPPSKSRRVMLASADKGDQKLEESNRDGKKSGKDGSKGSGNFSLKLGISHRFVEAELNAAGWPPWLTAAAGEAIHGWVPLRADSFEKLEKIGQGTYSSVFRAREVETGRLFALKKVRFDNFQPESVRFMSREITILRRLDHPNIMKLEGVITSRLSSSLYLVFEYMEHDLAGLVSCPDITFSDSQVKCYMRQLLSGLEHCHLRGIMHRDIKVSNILVNNDGILKMGDFGLANIISPSNKHPLTSRVVTLWYRPPELLMGSTNYGVSMDLWSVGCVFAEFFLGKPILKGRTEVEQLHKIFKLCGSPPDEFWKKCKLPHATMFKPQITYEGSFSERFPDILETALNLMKTLLSIDPHERGTASSALMSEYFSTKPFACDPSSMPKYPPNKEMDAKNREEVRRKKAGKVHEAATSRKQRRARKVLQEPNNFNNPASTDEKQNISQKAVKDDVKSNPNKGKRGAMQKEPSKPSMEAMSETSQINGVPHRFSILAGPVPASGASGFAWAKRRKPEVSSTLSDGSKSKISALDPSFAKGTYDLSRHLIDVAEKKHKDNTGHHAHHGQPRYSDASDTCSNLATIFDPTETLDGVLNTPGHKNLGNESARHVAGKSRLGR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1436 641 ProSiteProfiles Protein kinase domain profile. 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1436 641 SUPERFAMILY Protein kinase-like (PK-like) 107 404 IPR011009 -
Lele16g1436 641 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Lele16g1436 641 MobiDBLite consensus disorder prediction 405 501 - -
Lele16g1436 641 CDD STKc_CDK9_like 114 398 - -
Lele16g1436 641 MobiDBLite consensus disorder prediction 578 592 - -
Lele16g1436 641 MobiDBLite consensus disorder prediction 469 483 - -
Lele16g1436 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Lele16g1436 641 SMART serkin_6 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1436 641 FunFam probable serine/threonine-protein kinase At1g54610 197 437 - -
Lele16g1436 641 MobiDBLite consensus disorder prediction 615 641 - -
Lele16g1436 641 MobiDBLite consensus disorder prediction 417 450 - -
Lele16g1436 641 MobiDBLite consensus disorder prediction 1 69 - -
Lele16g1436 641 PANTHER CELL DIVISION PROTEIN KINASE 112 403 - -
Lele16g1436 641 FunFam probable serine/threonine-protein kinase At1g54610 101 196 - -
Lele16g1436 641 Pfam Protein kinase domain 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1436 641 MobiDBLite consensus disorder prediction 451 468 - -
Lele16g1436 641 MobiDBLite consensus disorder prediction 40 63 - -
Lele16g1436 641 MobiDBLite consensus disorder prediction 578 598 - -
Lele16g1436 641 Gene3D Transferase(Phosphotransferase) domain 1 197 438 - -
Lele16g1436 641 Gene3D Phosphorylase Kinase; domain 1 101 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1436 Lele-ChrLele16 8185854 8190049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1436 106 443 Core Cell Cycle Gene Families AT5G10270 44.759 5.02e-103 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele16g1436 Pkinase 4.7e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1059 13 21536318 21540778 Lele16g1436 16 8185854 8190049 hybridization
Lele14g0959 14 19941648 19953287 Lele16g1436 16 8185854 8190049 hybridization