Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1435 ATGAGAGGCGCCGACGACCAAGCAGGCCAGCCGAGATGCAATTGGGAAGAAGATATGCGACGGTCGGCAAGAGCGAACAGGAAAGTCTTCTTCTCTCCGTATCTGAAAATGGATGGATCAACTGGTCGTGGTGGTACTGGTGTGGACATGTATCTATCAAATTATAAATTAGGGAAAACACTTGGTATTGGATCCTTTGGCAAGGTGAAAATTGCTGAGCATATTTTGACAGGTCACAAAGTTGCCATTAAGATCCTCAACAAACGTAAGATAAGGAACATGGAAATGGAAGAAAAAGTCAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATCATACGACTCTATGAAGTCATAGAAACCCCGGCAGACATATATGTTGTGATGGAGCATGTAAAATCTGGAGAGCTCTTTGACTACATAGTAGAAAAGGGTAGGTTGCAAGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGCTCATAGAGACTTGAAGCCTGAGAATTTGCTGTTGGACTCCAACTGCAATGTCAAGATTGCAGATTTTGGTCTGAGCAACGTCATGGTTGATGGTCATTTCCTTAAGACAAGTTGCGGGAGCCCAAACTATGCTGCTCCTGAGGTAATCTCCGGAAAATTTTATGCTGGGCCTGAAGTGGATGTCTGGAGCTGTGGTGTAATTTTATACGCTCTTCTTTGTGGTACTCTTCCTTTCGATGATGAGAACATTCCAAACCTTTTCAAAAAAATAAAGGGTGGGATATACACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGATCTGATACCAAGAATGCTTGTGGTCGATCCTATGAAAAGGGTGACCATACCTGAGATCCGTAAACACCCATGGTTCCAAGCTCATCTCCCTCGATATTTGGCGGTGCCACCACCCGATACTTCACAACAAGCAAAAAAGATTGACGAGGAAATTCTTCAGGAAGTGGTTAATATGGGATTCGATAGGACTCAGTTGGGTGAATCTCTTCGCAACAGGATACAGAATGAGGGTACTGTGGCATATTATTTGCTATTGGACAATCGATTCCGTGTTTCGAGCGGATATCTTGGTGATGAGTTTCAAGAGAGTATGGATACTGGTTATAATCATATGCATCCTAATGAAGTCGCTGCTCCAGCTGTTGGGAACTGCTTTCCAGGGTATATGGATTACCAAGGAGCTGGATTGAGGCCACAGTTCCCTGCTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCTCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAATTGAATGTGTGTTGGAAGAAGATTGGACACTATACAATGAAGTGCCGGTGGGTTGCTGGCATTCTGGGTCATCATGAAGGAATGTTGAACAATCATAATCATTACTCTGGAGATGATTCTGCTATTATTGAGAATGATGCTATTTCTAAGTCAAATGTAGTCAAGTTTGAAATGCAGCTTTACAAAACCCGTGAAGAGAAGTATCTGCTTGATCTTCAAAGGGTCCAGGGCCCACAGTTGCTCTTCCTGGATCTTTGTGCCTCTTTCCTTGCGCAGCTACGTGTCCTTTAG 1644 0.4331 MRGADDQAGQPRCNWEEDMRRSARANRKVFFSPYLKMDGSTGRGGTGVDMYLSNYKLGKTLGIGSFGKVKIAEHILTGHKVAIKILNKRKIRNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEHVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVAHRDLKPENLLLDSNCNVKIADFGLSNVMVDGHFLKTSCGSPNYAAPEVISGKFYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRVTIPEIRKHPWFQAHLPRYLAVPPPDTSQQAKKIDEEILQEVVNMGFDRTQLGESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGDEFQESMDTGYNHMHPNEVAAPAVGNCFPGYMDYQGAGLRPQFPAERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYTMKCRWVAGILGHHEGMLNNHNHYSGDDSAIIENDAISKSNVVKFEMQLYKTREEKYLLDLQRVQGPQLLFLDLCASFLAQLRVL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1435 547 CDD STKc_AMPK_alpha 52 307 - -
Lele16g1435 547 SMART uba_6 330 367 IPR015940 -
Lele16g1435 547 CDD UBA_SnRK1_plant 329 369 - -
Lele16g1435 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Lele16g1435 547 Pfam UBA/TS-N domain 329 365 IPR015940 -
Lele16g1435 547 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 498 546 IPR001772 -
Lele16g1435 547 Pfam Protein kinase domain 55 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1435 547 FunFam Non-specific serine/threonine protein kinase 46 385 - -
Lele16g1435 547 FunFam Non-specific serine/threonine protein kinase 431 545 - -
Lele16g1435 547 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Lele16g1435 547 Gene3D Transferase(Phosphotransferase) domain 1 46 388 - -
Lele16g1435 547 Gene3D Kinase associated domain 1, KA1 431 545 - -
Lele16g1435 547 CDD AMPKA_C 425 544 - -
Lele16g1435 547 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 328 368 IPR015940 -
Lele16g1435 547 SUPERFAMILY Protein kinase-like (PK-like) 52 323 IPR011009 -
Lele16g1435 547 SMART serkin_6 55 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1435 547 SUPERFAMILY KA1-like 364 546 IPR028375 -
Lele16g1435 547 ProSiteProfiles Protein kinase domain profile. 55 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1435 547 FunFam Non-specific serine/threonine protein kinase 45 136 - -
Lele16g1435 547 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 53 346 - -
Lele16g1435 547 Pfam Kinase associated domain 1 504 546 IPR001772 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1435 Lele-ChrLele16 8176550 8182816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1435 52 307 CBL-interacting serine-threonine protein kinases AT4G24400 51.362 3.82e-91 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Lele16g1435 Pkinase 7.8e-79 CL0016