Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1434 ATGGCAAGGAGGAGGAAGGCTGTGGAAGTAGAAGACAGAAGCATGAAATGGGATGAGATGGTGAAGGAAGCTGAGGCACTTGGAGTGAGCAGAAGAGCGAGGAAGCGGTTTGTTGGGGTGAGACAAAGGCCTTCGGGAAGATGGGTTGCCGAGATTAAGGATACTATTCAGAAGATTAGGGTTTGGTTGGGAACTTTTGATACTGCAGAGGAAGCTGCTCGAGCTTATGATGAGGCTGCCTGTCTCCTTCGTGGTGCCAACACTAGGACCAATTTCTGGCCTTGTTCTTATTCTTCTTCAACCCCTGTTCTTTCCTCTAAGATCACCAATCTCCTCCTTCAAAGGCTCAAAACGAGGAACAACTCTTGCTCTGATTCTTCTTCCTCTGTTTCTCCTCTCTCTGATCAGCAAGCAGATTTGTACAATGAAGAAGAAGCTGCGGATTTTTCTATTGACCAGTTGACTGATTTCCTTAACGATCCTGAAGGTTACAACAGCGCAGGCAACAATGACTTTAATATGTTCACTGATCATAGTGCGCAAGTTGATTCCTTTACCAGTAGTCTTGAATCATGTTTGACTGAAACAGATGAGTGCAGGGAAATAGAAATGGGGTCGGAGAATGACGTCAGAAATATTTCTGACTGCAATTCAAGAGGGGAAAGAGAGGAAGAAAGTGAAGAAGAAATGAAGCATATGGGTGTGGAGGATTTTGAGTTTCTGGACAAGGTTACTCCATCATGTTACTATTCACCCTTTGAGATGGCTAAAGAGATGGAAGAGCTTGTGGCGGAGGCAGAGAGCTTTAGCGATGAGCCTGCAATGCTCAGAGCCGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCAGCTTCCCTTTATGCATTCAATGGAATACCTGAATGCTTGAAGCTGAAGTTAGAGTCAGGAAACTCCAAGGCAAGAGGGGTTTCTGATCATTTAGCCAACCTTCAGATGGCATGTGGCAGCAAGGAGGACAAAGAAGACATGGGAGTAATGGGAAGGAAAGAAGAAGAAAACCCAGCGACATTAAACGAGGCGGAGGCTTCGTCATCTTCTACCAGTGTTGATGGTGAATTGTTGCTTTGGAATTCACTGGATCTTCCTCCCATATGTTTCGTTAACTAA 1149 0.4508 MARRRKAVEVEDRSMKWDEMVKEAEALGVSRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSYSSSTPVLSSKITNLLLQRLKTRNNSCSDSSSSVSPLSDQQADLYNEEEAADFSIDQLTDFLNDPEGYNSAGNNDFNMFTDHSAQVDSFTSSLESCLTETDECREIEMGSENDVRNISDCNSRGEREEESEEEMKHMGVEDFEFLDKVTPSCYYSPFEMAKEMEELVAEAESFSDEPAMLRAAMKRMKYERKFSASLYAFNGIPECLKLKLESGNSKARGVSDHLANLQMACGSKEDKEDMGVMGRKEEENPATLNEAEASSSSTSVDGELLLWNSLDLPPICFVN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1434 382 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Lele16g1434 382 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Lele16g1434 382 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 301 - -
Lele16g1434 382 MobiDBLite consensus disorder prediction 331 359 - -
Lele16g1434 382 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Lele16g1434 382 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Lele16g1434 382 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Lele16g1434 382 MobiDBLite consensus disorder prediction 331 350 - -
Lele16g1434 382 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Lele16g1434 382 CDD AP2 35 92 IPR001471 GO:0003700|GO:0006355
Lele16g1434 382 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Lele16g1434 382 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1434 Lele-ChrLele16 8174558 8175706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1434 30 112 AP2-EREBP Transcription Factor Family AT5G19790 71.084 3.02e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele16g1434 AP2 1.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1062 13 21551601 21552413 Lele16g1434 16 8174558 8175706 hybridization
Lele14g0960 14 19954142 19955293 Lele16g1434 16 8174558 8175706 hybridization