LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g1423	ATGGGTCGGTCACCATGCTGCGACAAGGTGGGCTTAAAGAAAGGGCCATGGACTCCTGAGGAAGATCAGAAACTGTTAGCTTATATCGAAGAACACGGCCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTTCAGAGATGTGGCAAGAGCTGCAGACTGAGATGGACCAATTATCTTAGGCCTGATATAAAGAGAGGAAAGTTCAGCTTGCAAGAAGAGCAAACCATCATTCAACTTCATGCCCTCTTAGGGAACAGGTGGTCGGCTATAGCAACACACTTGCCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAACACGCATCTTAAGAAAAGGTTAGCCAAAATGGGGATCGACCCGGTGACCCACAAGCCCAAGAACGATGCCCTTCTTTCCATTAACGGCCAATCCAAGAGTGCTGCCAACCTTAGTCACATGGCTCAATGGGAGAGTGCTAGGCTTGAAGCTGAAGCAAGGTTGGTTAGAGAATCAAAACTACGTTCACATTCATTGCAGCAGCAGCAGCAGCAGCTTTGCAGCTCTGGGTTTTCATCTTCATCTTCTGCTGCTTCAACTTCATCAGCCCCAGTTGCGAATAATAAACCAGAGGGACCACCACCTATTTCCTCACGCTCTCTAGATGTGCTTAAGGGATGGAATAATGGAGGTTGGTTGAAATCTACTCGTGAAGGCCATAATGTTGGCGGCGGCGACCTTGACTCCCCTTCGTCTTCCCTGACTTTCTCCGAGAACGCGCAGCCGATTATGACCAGTGGACTTGGAGAAAGTACAATGCCCATGATTGAGTTCGTGGGCTCGTCTGGTTCTTCCGAGACAGGAATTGTGAAAGAGGAAGGTGAACAAGAATGGAAAGGTTATGAAAGTTCAGTGCATCTTCCAGAATACAAAGATGGTATAGATCATAACTCCATGTCTTTTGCTTCTAGCCTGCATGAGTTGACCATGTCCATGGAAGGCACGTGGACGTCTGAGTCTCTTAGGGCTAGTACTGATGCTATCGCTGAGGAAGGATTCACCAATCTTTTGCTTAATACTAACTCCGATGGCCGGAGTTTGTCGGAGGAGGGCGGAGGAGAGTCTAATAACTGTGAAGGTAATGGAGGCAGTACTGGGAGTGACCTTTATGAAGATAACAAGAACTACTGGAACAGCATTCTTAATTTAGTCAACTCTTCTCCTGCTGACTCTCCCATGTTCTGA	1230	0.4748	MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSINGQSKSAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQQQQLCSSGFSSSSSAASTSSAPVANNKPEGPPPISSRSLDVLKGWNNGGWLKSTREGHNVGGGDLDSPSSSLTFSENAQPIMTSGLGESTMPMIEFVGSSGSSETGIVKEEGEQEWKGYESSVHLPEYKDGIDHNSMSFASSLHELTMSMEGTWTSESLRASTDAIAEEGFTNLLLNTNSDGRSLSEEGGGESNNCEGNGGSTGSDLYEDNKNYWNSILNLVNSSPADSPMF	409

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g1423	409	Gene3D	-	69	116	-	-
	Lele16g1423	409	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Lele16g1423	409	MobiDBLite	consensus disorder prediction	170	202	-	-
	Lele16g1423	409	MobiDBLite	consensus disorder prediction	355	384	-	-
	Lele16g1423	409	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	233	-	-
	Lele16g1423	409	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Lele16g1423	409	Gene3D	-	13	66	-	-
	Lele16g1423	409	FunFam	MYB-related transcription factor	13	66	-	-
	Lele16g1423	409	FunFam	MYB transcription factor	69	116	-	-
	Lele16g1423	409	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Lele16g1423	409	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lele16g1423	409	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lele16g1423	409	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lele16g1423	409	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Lele16g1423	409	SMART	sant	66	114	IPR001005	-
	Lele16g1423	409	SMART	sant	13	63	IPR001005	-
	Lele16g1423	409	MobiDBLite	consensus disorder prediction	170	216	-	-
	Lele16g1423	409	CDD	SANT	16	61	IPR001005	-
	Lele16g1423	409	CDD	SANT	69	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g1423	Lele-ChrLele16	8115922	8117941	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g1423	1	409	MYB Transcription Factor Family	AT3G01140	52.009	5.25e-125	363

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele16g1423		Myb_DNA-binding	1.5e-15	CL0123