Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1409 ATGCAGACGACAAGTCCAAATACGTGGAGCTTGAATCCTGAGAGAGATCAGCCGCACAACCCAAGCACCCATAAACGACCTGCTGTTCCTCTTCCCTTCGCAAAACTCGCAGAGAATTACCCTCCTGGTTTTCTCAGAAAGGTATTGGCAGAGATAATAGGAACATATCTGTTGGTGTTTGTGGGAAGTGGGGCGGCTGCTCTGAATGCTTTTGATGAGCAGAAAATATCAAAACTAGGATCTTCACTTGCAGGAGGATTCATTGTGATTGTGATGATTTATGCTATCGGACACGTCTCTGGTGCTCACTTGAACCCAGCAGTGTCCTTAGCTTTTGCCGCCGTCAGCCATTTTCCATGGAAACAGGTTCCATTATACGTGGCAGCCCAATTGACAGGAGCCATTTCTGCCTCATTTACGTTGCGGTTGATATTGGACCCCATAAGACAGCTTGGGACAACCTCACCTTCTGGAAGCAATGTTCAAGCTCTCATCATGGAGATGGTAGTAACGTTCACTATGATGTTCGTCGCCTCCGCCGTGTCAACTGATGCAAAAGCTGTAAAATCGCCTTACATTCATCCAAATCATGCTGCTTTCAAAACTTTTTACGTTGGAGAGCTCGCAGGAGTTGCAGTAGGCTCTTCAGTAATCATAGCAGGCATCCTTGCAGGACCTATATCAGGGGGATCGATGAACCCAGCAAGAACACTTGGTCCTGCAATAGCAAGTGGATCCTATAAAGGACTTTGGGTCTATGTGGTTGGACCGGTTACTGGGGCACTTTTGGGAGCATGGTCCTACATTACTATTAAAGAGACAGATGACAAAGCTTCCGCCACTTCAGCGCTTTCATTTCCACTCGAGCTTAGCTCAAAGAATAGGGAAACTGAGCAAGTTTAA 903 0.4662 MQTTSPNTWSLNPERDQPHNPSTHKRPAVPLPFAKLAENYPPGFLRKVLAEIIGTYLLVFVGSGAAALNAFDEQKISKLGSSLAGGFIVIVMIYAIGHVSGAHLNPAVSLAFAAVSHFPWKQVPLYVAAQLTGAISASFTLRLILDPIRQLGTTSPSGSNVQALIMEMVVTFTMMFVASAVSTDAKAVKSPYIHPNHAAFKTFYVGELAGVAVGSSVIIAGILAGPISGGSMNPARTLGPAIASGSYKGLWVYVVGPVTGALLGAWSYITIKETDDKASATSALSFPLELSSKNRETEQV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1409 300 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Lele16g1409 300 Pfam Major intrinsic protein 44 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele16g1409 300 Gene3D Glycerol uptake facilitator protein. 11 282 IPR023271 -
Lele16g1409 300 PANTHER AQUAPORIN NIP2-1 26 280 IPR034294 -
Lele16g1409 300 MobiDBLite consensus disorder prediction 1 17 - -
Lele16g1409 300 SUPERFAMILY Aquaporin-like 39 273 IPR023271 -
Lele16g1409 300 CDD MIP 46 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele16g1409 300 MobiDBLite consensus disorder prediction 1 25 - -
Lele16g1409 300 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele16g1409 300 PRINTS Major intrinsic protein family signature 214 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele16g1409 300 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele16g1409 300 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele16g1409 300 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele16g1409 300 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1409 Lele-ChrLele16 8041054 8043146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1409 46 298 Major Intrinsic Protein MIP AT5G37820 44.922 3.07e-69 216