Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1403 ATGGACTTAACCCCCACAATCGCCAACACCGCCACCAATACTCCTACTAGCACAAAATCCCCAGAACACGACAGTGAAACGCCGACCCGGATCCAGACCGCCGCCAAGCCTTTGTCCTCCTCCAACGGCGTCCTCAAGCGCCACCACCACCACCGCCTCCCCAGCCAGCCACTGCCAGTCACGTACAAGGAATGCCTGAAAAACCATGCAGCCAGCTTAGGAGGCCACGCCCTGGACGGTTGCGGCGAGTTCATGGCCTCTACCACCGCCAACCCCGCCGACCCCAGCTCCATCAAATGCGCCGCCTGTGGCTGCCACCGCAATTTCCACCGCCGTGAGCCAGAAGAGCCTATCTCTACAACGCACGTCATCGAGTACCAGTCTCACCATCGACACCATCCCCCGCCGCCTCCGCCTTTTCACGTTTCCAATCGAAGCCCCAATTCGGCGTCGCCACCTCCGATCTCCTCTTCGTACTACCCGTCCGCACCCCATATGCTTCTGGCTCTCTCTGCGGCAGGGATACAAGCTCCTCCGGAGAGTGCGGCTGTTCCCGCAAGTGCTCTTGCAACGCCGAGCCCGAATGCGCGCAAGCGGTTCAGGTCCAAGTTCACCCAGGATCAGAAGGAGAAGATGTACCATTTCGCGGAGAGGGTGGGGTGGAAGATGCAGAAGAGGGACGAAGAATTGATTCAAGAGTTCTGCAATGAGGTTGGGGTTGACAGGGGAGTGTTGAAGGTTTGGATGCACAACAACAAGAACACCTTCGGCAGGAGAGATGCTGGTAATAATCATGATGGTAGGAACACTCTAGAGCAAGACCCTCACGTTCTCCCCACTGAAATCCACGCCAACGACGACGGCGGCGGCGCGGAGGATCCGAATCACCACCTCTTCACCAACGATAATAGTGGGGCAAACCTCGGTACTAATGGGTTCTCTTCGTCCTCTTGA 954 0.5776 MDLTPTIANTATNTPTSTKSPEHDSETPTRIQTAAKPLSSSNGVLKRHHHHRLPSQPLPVTYKECLKNHAASLGGHALDGCGEFMASTTANPADPSSIKCAACGCHRNFHRREPEEPISTTHVIEYQSHHRHHPPPPPPFHVSNRSPNSASPPPISSSYYPSAPHMLLALSAAGIQAPPESAAVPASALATPSPNARKRFRSKFTQDQKEKMYHFAERVGWKMQKRDEELIQEFCNEVGVDRGVLKVWMHNNKNTFGRRDAGNNHDGRNTLEQDPHVLPTEIHANDDGGGAEDPNHHLFTNDNSGANLGTNGFSSSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1403 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 255 - -
Lele16g1403 317 Pfam ZF-HD protein dimerisation region 60 114 IPR006456 -
Lele16g1403 317 Gene3D - 187 257 - -
Lele16g1403 317 MobiDBLite consensus disorder prediction 1 30 - -
Lele16g1403 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 113 IPR006456 -
Lele16g1403 317 FunFam Zinc-finger homeodomain protein 2 186 258 - -
Lele16g1403 317 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 197 254 IPR006455 -
Lele16g1403 317 SUPERFAMILY Homeodomain-like 192 258 IPR009057 -
Lele16g1403 317 MobiDBLite consensus disorder prediction 125 157 - -
Lele16g1403 317 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 113 IPR006456 -
Lele16g1403 317 MobiDBLite consensus disorder prediction 254 317 - -
Lele16g1403 317 MobiDBLite consensus disorder prediction 297 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1403 Lele-ChrLele16 8013414 8014367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1403 1 295 ZF-HD Transcription Factor Family AT3G28920 48.860 2.57e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele16g1403 ZF-HD_dimer 2e-28 No_clan