Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1398 ATGGAGGGGAAGAACGAAATAGATATTTTTGATGATGTTCTGCTGCCCGGTTTTCGGTTTCATCCGACAGACGAGGAGCTTGTTGACTTCTACCTCAAGAAAAAAATACAGCAGAAGACCCTGCTGCCTATTGACATCATCAAGCAAGTGGATATTTACAAGTACGAGCCATGGGATCTTCCAAAGATGGCGAGCAGTACTGATGAAAAGGAGTTGTATTTCTACTGTCAAAGAGATCGAAAATACAGAAACAGTGCTCGGCCAAATCGAGTGACCAATGCTGGGTTCTGGAAGGCCACTGGAACTGACCGACCTATATGCTCTTCAAAGGGAAAGTGCATCGGTTTAAAGAAATCGCTTGTGTTCTACAGAGGCAGAGCCGCTAAAGGCATCAAAACTGAATGGATGATGCATGAGTTTCGCCTTCCTTCTCTTCCTCGTTCTTCTCTTCCTAGAAACCTCTCTCCCAAAACCCTCCCTCAAACTGACGCATGGGCGATTTGTAGGATATTCAAGAAAACCAGCTCACACAAGCCTTCATCTCATTCTCACACCTGGATCGCTCAGTTCCCAGAGAGCTTGCCGGTGGGTGATATCCTCACTCAGGGTGGTGGTGCCACTGCCACTGCCTCCGCCTCCGGCATTGGCTTCAGTACAGAAAATATCTCCGGCGCGTATCTCTCTGCTTCTGATGTTCCCTGTTACAACCCCATCTCCGCACTGGAAGCGTCAGGATCCATGCTTTTGAACCCAGACAATGAAGGATTTGAAGGGGCAAACCAGCAGTTTAGTGGCTTATCAACGAGCGTCCCTCAGGATATAAACAGAGGAATAGGGTTTTCTTTCCCTTCGCCTGCTTGTGGTGATGTCTGTAAGTCTCCTCTGCTATGGGACTCCCCTTTGTTCGACTGA 912 0.4803 MEGKNEIDIFDDVLLPGFRFHPTDEELVDFYLKKKIQQKTLLPIDIIKQVDIYKYEPWDLPKMASSTDEKELYFYCQRDRKYRNSARPNRVTNAGFWKATGTDRPICSSKGKCIGLKKSLVFYRGRAAKGIKTEWMMHEFRLPSLPRSSLPRNLSPKTLPQTDAWAICRIFKKTSSHKPSSHSHTWIAQFPESLPVGDILTQGGGATATASASGIGFSTENISGAYLSASDVPCYNPISALEASGSMLLNPDNEGFEGANQQFSGLSTSVPQDINRGIGFSFPSPACGDVCKSPLLWDSPLFD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1398 303 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Lele16g1398 303 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Lele16g1398 303 SUPERFAMILY NAC domain 13 173 IPR036093 GO:0003677|GO:0006355
Lele16g1398 303 FunFam NAC domain-containing protein 35 23 176 - -
Lele16g1398 303 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 183 - -
Lele16g1398 303 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1398 Lele-ChrLele16 7975490 7976590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1398 2 212 NAC Transcription Factor Family AT5G39820 59.292 7.56e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele16g1398 NAM 6.6e-36 No_clan