Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1391 ATGGCCTTCCCTCCTTCTCACACTTTCATGTTTCACACCAATCACCCCCATGAAGATCATCATCATCATCATCAAAACCCCCACCTCTCCTCATCTCCATCCCTCAAATCCTTCCCTCCATTACCACCCCATCACTTTCAAACTCGGAGTGCACCGTTCATGGTGAAGAGATCGATGTCGTTTTCAGGGATAGAGAGCAGGTGCGATATGGAAGTGAATGGAGGTGACGATGATTTGTCGGATGATGGGTCGGTGCAGATAGGGGAGAAGAAGAAAAGGCTGAACATGGAGCAGGTTAAGGCACTCGAGAAGAGCTTTGAGGTTGGGAACAAGCTCGAGCCAGAGAGGAAACTGGAGCTGGCTAAGGCTTTGGGTCTGCAGCCACGTCAGATCGCCATTTGGTTTCAGAACAGGAGAGCCCGCTGGAAGACCAAGAACCTCGAGAAAGAATACGAATCCCTCAAGAAACAGTTCGAAGCTCTCAAGTCCGACAACGATGCTCTTAACCTTCAGAACGAGAAACTTCATGCAGAGTTGCAAGCTCTGAAAGCACGGGATCACCACTGTGAAGGAGGAACAGTGAGCCTGGTGAAGAAAGAAACTGAGGGCTCATGGAGCAATAATGGAAGTGACAACAGCTCAGACATCAACTTGGACCTGTCAAGAACACCAGTTAGAAACAGTCCTGTTTGTTATCAGAACGGTAAAAGCCATCAGCAGCTCATAGGCTCCAATCTAAAGCCCACCAGCATAACACAACTCCTCCAGTTCTCAACAAGATCAGAACTCCAAGACGAAACCTTCTCCAACATGTTCAACACCACCAACACTGCCATCGATGATCATCATCAGCAGAACTTCTGGATCTGGCCTCACGAGCAGCACCAGTTTCATTGA 897 0.4861 MAFPPSHTFMFHTNHPHEDHHHHHQNPHLSSSPSLKSFPPLPPHHFQTRSAPFMVKRSMSFSGIESRCDMEVNGGDDDLSDDGSVQIGEKKKRLNMEQVKALEKSFEVGNKLEPERKLELAKALGLQPRQIAIWFQNRRARWKTKNLEKEYESLKKQFEALKSDNDALNLQNEKLHAELQALKARDHHCEGGTVSLVKKETEGSWSNNGSDNSSDINLDLSRTPVRNSPVCYQNGKSHQQLIGSNLKPTSITQLLQFSTRSELQDETFSNMFNTTNTAIDDHHQQNFWIWPHEQHQFH 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1391 298 Gene3D - 84 154 - -
Lele16g1391 298 FunFam Homeobox-leucine zipper protein ATHB-13 81 149 - -
Lele16g1391 298 SUPERFAMILY Homeodomain-like 80 147 IPR009057 -
Lele16g1391 298 Coils Coil 137 185 - -
Lele16g1391 298 MobiDBLite consensus disorder prediction 1 50 - -
Lele16g1391 298 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Lele16g1391 298 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Lele16g1391 298 Pfam Homeobox associated leucine zipper 145 185 IPR003106 GO:0006355|GO:0043565
Lele16g1391 298 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Lele16g1391 298 CDD homeodomain 90 146 IPR001356 GO:0003677
Lele16g1391 298 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Lele16g1391 298 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Lele16g1391 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 65 233 IPR045224 GO:0003700
Lele16g1391 298 SMART HOX_1 88 149 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1391 Lele-ChrLele16 7912446 7914229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1391 1 291 Homeobox Transcription Factor Family AT5G15150 46.708 2.70e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele16g1391 Homeodomain 1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1106 13 21846297 21848101 Lele16g1391 16 7912446 7914229 hybridization
Lele14g1001 14 20222070 20223782 Lele16g1391 16 7912446 7914229 hybridization