Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1380 ATGACGGACGGTCATCTCTTTAACAACATCGCTCTCGGTGGCCGTGGAGGCACCAATCCAGGGCAGATGAAAATATATTCTGGAGGGATTTTATGGAAAAGACAGGGGGGCGGTAAAGCAATTGAGGTCGATAAAGCTGACATAATGGGAGTGACTTGGATGAAAGTCCCAAGAACTAATCAGCTTGGAGTTCGAATCAAAGATGGATTGTACTACAAGTTCACTGGGTTCCGTGACCAGGATATGGCAAGTTTGACTAGCTTTTTCCAAAATACATGTGGGATTACACCAGAGGAAAAGCATCTTTCTGTTAGTGGGCGTAATTGGGGAGACGTAGATCTAAATGGAAACATGCTGACTTTCATGGTTGGCTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCTCAAACACAGCTCCAAGGGAAAAATGAAGTGACCTTGGAGTTTCATGTGGATGATACAACTGGAGCTAATGAGAAAGATTCTTTGATGGAAATAAGTTTTCACATACCAAATTCCAACACTCAATTTGTTGGTGATGAAAATTGTCCTCCTGCTCAGGTTTTCCGTGATAAAATCATGTCTATGGCAGACGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCTATTCTAACACCAAGGGGGCGGTACAATGTTGAATTACATATGTCATTCTTGCGTCTTCAAGGGCAGGCTAATGATTTCAAAATCCAGTACAGCAGTGTAGTTCGCCTATTTTTACTTCCCAAGTCAAATCAGCCACATACCTTTGTCATTATTAGTCTTGATCCTCCTATTCGTAAAGGACAAACTTTGTACCCACACATTGTAATGCAGTTTGAAACTGATTACGTAGTTCAAAGCACCTTGTCAATGAGCGAAGATCTTTACAACAGCAAGTTCAAGGACAAGTTGGAGCTTTCATATAAGGGGCTCATCCATGAAGTTTTCACAACAATATTGCGTGGACTGTCTGGTGCCAAAGTTACCAAACCAGGAAAATTCAGGAGCTGTCAAGATGGTTATGCAGTGAAATCGTCTTTGAAAGCTGAAGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTTTACCTAAACCTCCCACCCTCATTCTTCATGAAGAGATTGACTATGTTGAATTTGAAAGGCATACTGCTGGGGGTTCAAATATGCATTATTTTGACCTTCTTATTAGACTAAAAACTGAGCAAGAGCATCTATTCCGTAATATTCAGAGAAATGAATACCACAATCTTTTTGACTTTATCAGTTCAAAGGGCTTGAAAATTATGAACCTCGGAGGAGCCCAAGCCACTGATGGTGTTGCTGCTGTTCTTCAAGAAGATGATGATGATGCTGTTGATCCTCATCTTGAGCGCATAAAAAATGCAGCTGGTGGAGATGAGAGTGATGAAGAGGATGAGGATTTTGTTGTCGATGAGGATGATGGTGGTTCTCCAACTGATGATTCTGGAGATGAGTCTGATGCAAGTGAAGATGGTGAAAAAGAGAAGCCCGCCAAAAAGGAACCAAAGAAGGAACTGTCTTCTAAGGCATCTACTTCTAAGAAGAGATCTAAAGATGGAGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGATCCTAATGCACCGAAGAGAGCATTGTCTGGTTTCATGTTCTTCTCCCAAATGGAGAGAGAGAATCTGAAGAAAAGCAATCCAGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAGAAGATGTCAGCGGAGGAGAAGGAACCATATGAAGCAAAAGCTCGTGCAGATAAAAAACGTTACAAAGATGAGATCAGTGGGTACAAGAATCCGCAACCCATGAACGTAGACTCAGGAAATGAATCTGATAGTGCTTGA 1920 0.4135 MTDGHLFNNIALGGRGGTNPGQMKIYSGGILWKRQGGGKAIEVDKADIMGVTWMKVPRTNQLGVRIKDGLYYKFTGFRDQDMASLTSFFQNTCGITPEEKHLSVSGRNWGDVDLNGNMLTFMVGSKQAFEVSLADVSQTQLQGKNEVTLEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENCPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYNVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSTLSMSEDLYNSKFKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHTAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGAQATDGVAAVLQEDDDDAVDPHLERIKNAAGGDESDEEDEDFVVDEDDGGSPTDDSGDESDASEDGEKEKPAKKEPKKELSSKASTSKKRSKDGDEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKSNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARADKKRYKDEISGYKNPQPMNVDSGNESDSA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1380 639 CDD PH2_SSRP1-like 342 441 - -
Lele16g1380 639 FunFam FACT complex subunit SSRP1 96 179 - -
Lele16g1380 639 Gene3D - 1 92 IPR011993 -
Lele16g1380 639 MobiDBLite consensus disorder prediction 470 562 - -
Lele16g1380 639 FunFam FACT complex subunit SSRP1 1 93 - -
Lele16g1380 639 CDD PH1_SSRP1-like 207 340 - -
Lele16g1380 639 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Lele16g1380 639 SUPERFAMILY HMG-box 542 624 IPR036910 -
Lele16g1380 639 SMART Rtt106_2 348 441 IPR013719 -
Lele16g1380 639 FunFam Fact complex subunit ssrp1 199 338 - -
Lele16g1380 639 Gene3D - 199 338 - -
Lele16g1380 639 MobiDBLite consensus disorder prediction 625 639 - -
Lele16g1380 639 MobiDBLite consensus disorder prediction 596 639 - -
Lele16g1380 639 MobiDBLite consensus disorder prediction 596 620 - -
Lele16g1380 639 SUPERFAMILY PH domain-like 206 440 - -
Lele16g1380 639 FunFam FACT complex subunit SSRP1 339 448 - -
Lele16g1380 639 MobiDBLite consensus disorder prediction 476 505 - -
Lele16g1380 639 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 608 - -
Lele16g1380 639 Gene3D High mobility group box domain 538 633 IPR036910 -
Lele16g1380 639 CDD HMGB-UBF_HMG-box 555 620 - -
Lele16g1380 639 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Lele16g1380 639 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Lele16g1380 639 Gene3D - 339 448 IPR011993 -
Lele16g1380 639 Pfam HMG (high mobility group) box 555 623 IPR009071 -
Lele16g1380 639 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Lele16g1380 639 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Lele16g1380 639 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Lele16g1380 639 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Lele16g1380 639 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Lele16g1380 639 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Lele16g1380 639 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Lele16g1380 639 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Lele16g1380 639 FunFam FACT complex subunit SSRP1 538 632 - -
Lele16g1380 639 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 555 623 IPR009071 -
Lele16g1380 639 Gene3D - 97 179 IPR038167 -
Lele16g1380 639 MobiDBLite consensus disorder prediction 506 546 - -
Lele16g1380 639 SMART hmgende2 554 624 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1380 Lele-ChrLele16 7844554 7850653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1380 551 623 ARID Transcription Factor Family AT1G04880 39.726 3.03e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele16g1380 POB3_N 5.2e-22 CL0266