Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1379 ATGGGAGTTACAATTACGTTACTGGTAGTGGCCTTGGCCATTACAATTCCATGCCTCGAGGCTAACATTGGAGAGTTTGACGATTATCTCCGAGAACAAGAAGCGCAAGCCCGCCGAGCAGCTCTCGAAGCCTACGTGCCCGACCCTTTAAGCGTCACGTCCGAGCTTAACATGCATGTTCACCTAGCCATGGATGAAGGCAACAGCAGCAGAGGGAGGGACCTGAGAGAGCAGGGAAAGAAGGGTTCCCCCAAACCATGCGTAGCCACCAACCCAATCGACCAATGCTGGAGATGCAACCCAGATTGGGAGAAGAATCGCTTTAAGTTAGCCGAATGTCCCATGGGTTTCGGTCGCAACGCCAAAGGAGGTTTGGGCGGTAAGATCTACGTCGTCACCGATAATTCCGACACCCACGTGATTAACCCGAAACCCGGAACTCTGAGGCACGCGGTGATCCAGAATGGGCCTTTGTGGATCATATTCAACCGCACCATGGTCATCAAGTTGAAGCAGGAGTTGCTGGTCTCGTCCAACAAGACCATCGATGGTCGTGGACACGATGTCGCGATAAGAAACGGTGCCGGCATCACTTTGCAGTACGCGAGTAACGTCATCATCCACGACCTTCACATTGGATACATCAAACCTAAGAGGGGTGGTAGAATAAGGGACTCCGTCGACCACGTTTCGATTAGAACCAGAAGTGATGGCGACGCCATCAGCCTCTTTGGTGCCACCAATATTTGGATCGATCATATCTCCCTCGCCAATGCTGAGGACGGCCTCATCGACGTCATCAAGGGTTCCACCGGCGTTACCATCTCCAATTGCCACATGACCAGACACAACGATGTGATGTTGTTCGGAGCTGGTGAAGTCTATCTCGAGGACAAGATGATGCAGGTAACGGTGGCGTTCAACCACTTCGGGAACGGATTGATACAGAGGATGCCGAGATGCAGATATGGGTTCTTCCACGTGGTGAACAACGATTATACTCACTGGATTATGTACGCCATTGGAGGAAGCTCCAGCCCGACCATACTGAGCCAAGGAAACCGATTCTTTGCTCCGAACAACAACGCGACGAAGGAGGTAACGAACAGGGTGGGAACGCAGCCGGAGAAGTGGAAAGACTGGCAATGGCAATCGGAGTTGGACCAGTTGGATAACGGAGCCGTTTTCATTCAATCGGGAGGACCCATAACCTCCATCGACAGAAGCACTTTGATCCCACCAAGGCCTGGGAATGAAGCTCCATTGCTCGCAAGATATTCGGGTGCGATAAGGTGCAAGCCTGGCAAGCCTTGTTAA 1317 0.5209 MGVTITLLVVALAITIPCLEANIGEFDDYLREQEAQARRAALEAYVPDPLSVTSELNMHVHLAMDEGNSSRGRDLREQGKKGSPKPCVATNPIDQCWRCNPDWEKNRFKLAECPMGFGRNAKGGLGGKIYVVTDNSDTHVINPKPGTLRHAVIQNGPLWIIFNRTMVIKLKQELLVSSNKTIDGRGHDVAIRNGAGITLQYASNVIIHDLHIGYIKPKRGGRIRDSVDHVSIRTRSDGDAISLFGATNIWIDHISLANAEDGLIDVIKGSTGVTISNCHMTRHNDVMLFGAGEVYLEDKMMQVTVAFNHFGNGLIQRMPRCRYGFFHVVNNDYTHWIMYAIGGSSSPTILSQGNRFFAPNNNATKEVTNRVGTQPEKWKDWQWQSELDQLDNGAVFIQSGGPITSIDRSTLIPPRPGNEAPLLARYSGAIRCKPGKPC 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1379 438 SUPERFAMILY Pectin lyase-like 91 404 IPR011050 -
Lele16g1379 438 Gene3D - 90 430 IPR012334 -
Lele16g1379 438 PANTHER PECTATE LYASE 18-RELATED 37 436 IPR045032 GO:0030570
Lele16g1379 438 SMART amb_all 165 362 IPR002022 -
Lele16g1379 438 Pfam Pectate lyase, N terminus 22 71 IPR007524 GO:0030570
Lele16g1379 438 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Lele16g1379 438 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Lele16g1379 438 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Lele16g1379 438 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Lele16g1379 438 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Lele16g1379 438 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Lele16g1379 438 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Lele16g1379 438 MobiDBLite consensus disorder prediction 67 81 - -
Lele16g1379 438 Pfam Pectate lyase 171 356 IPR002022 -
Lele16g1379 438 MobiDBLite consensus disorder prediction 67 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1379 Lele-ChrLele16 7840887 7842397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1379 2 438 Polysaccharide Lyase AT1G14420 52.993 6.64e-169 480