Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1363 ATGGACGTATATTTAAGAGGGAGCAGCTTGGGTTGGAAGGTTAATACAGTGTTGCAGTTAGCTTTAGTTGCTGCAGCTCTTCTTCAACCAGAGTTTGGAACCCAAGAAACTCAATCGTACATTACTTATCTGAGTTGGTTAGTAGCTTCAACCACAATAAGGTCAGCATATGGAGCACAATACGCACGCAGATTAGCTCTTATATCAAATGGCGGATCAGTGCTTAAATTAAACAAAGAACTTTCTTCAGTGGCGGTTGATCCCTCTCGGGTCACTCAACTCTCGTGGCGTCCTAGAGCCTTTCTATACAAGGGATTCTTGTCTGAGGAAGAATGTGACCACTTCATCATTCTGGCGAAGGATAAGCTAGAAAAGTCTATGGTGGCAGATAATGAGTCAGGCAAAAGTGTAGAGAGTTCAGTCAGAACAAGCTCTGGAATGTTCCTTGAAACTGCCCAGAATGGCGAGCCTATTCAAATATTGCACTATGAGAATGGTCAGAAGTATGAGCCACATTTCGATTTTTTTCATGACGAGGTTAATCAACGAATGGGTGGCCATCGGGTGGCCACGGTGCTGATGTATTTGTCCAATGTTGACAAGGGTGGGGAGACAATTTTCCCCAATTCTAAGGCAAAGTCTTCCCAGCCAAAGGATGAGAATTCGTCTGAATGTGCTCACAAAGGCTATGCAGTAAAACCTGAAAAGGGGGATGCCTTGCTGTTCTTCAGCCTTCATCCGGATGCGACGACGGATACTAGCAGCTTGCACGGAAGCTGCCCAGTGATAAAAGGGGAGAAGTGGTCGGCGACAAAGTGGATACATGTGGCGGACTATAGTAAACCAATAAGAAAGGCAAGTGAATCTGGAAGATGTGTGGATGAGAATGAGAATTGCGCAGAGTGGGCTAAAAGAGGTGAATGTGAGACGAACCCTCTTTACATGGTTGGAAGTGATGCAGGCAGAGGATATTGCAGGAAGAGTTGCAATGTCTGCTCTTCTTAG 1005 0.4527 MDVYLRGSSLGWKVNTVLQLALVAAALLQPEFGTQETQSYITYLSWLVASTTIRSAYGAQYARRLALISNGGSVLKLNKELSSVAVDPSRVTQLSWRPRAFLYKGFLSEEECDHFIILAKDKLEKSMVADNESGKSVESSVRTSSGMFLETAQNGEPIQILHYENGQKYEPHFDFFHDEVNQRMGGHRVATVLMYLSNVDKGGETIFPNSKAKSSQPKDENSSECAHKGYAVKPEKGDALLFFSLHPDATTDTSSLHGSCPVIKGEKWSATKWIHVADYSKPIRKASESGRCVDENENCAEWAKRGECETNPLYMVGSDAGRGYCRKSCNVCSS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1363 334 Pfam ShK domain-like 292 332 IPR003582 -
Lele16g1363 334 Gene3D - 282 333 - -
Lele16g1363 334 Gene3D q2cbj1_9rhob like domain 90 276 - -
Lele16g1363 334 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 154 276 IPR005123 -
Lele16g1363 334 ProSiteProfiles ShKT domain profile. 292 332 IPR003582 -
Lele16g1363 334 SMART p4hc 98 275 IPR006620 GO:0005506|GO:0016705|GO:0031418
Lele16g1363 334 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 80 277 IPR045054 -
Lele16g1363 334 Pfam 2OG-Fe(II) oxygenase superfamily 159 275 IPR044862 -
Lele16g1363 334 SMART ShkT_1 291 333 IPR003582 -
Lele16g1363 334 FunFam Prolyl 4-hydroxylase 4 90 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1363 Lele-ChrLele16 7773568 7778633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1363 13 64 Acyl Lipid Metabolism Gene Families AT4G04870 68.519 3.81e-16 76.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1127 13 22016769 22021574 Lele16g1363 16 7773568 7778633 hybridization