Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1356 ATGGGAACGGAAGACAAGTACTCTGATCCGCTTGCTCTCTCCGCAGCATATTTTCCTGAGAAAATCTACCAACTCTATGGCCTATCCCAAATCCCTGGAGGAGGAGGAGGAGGGGGAGGAGTGGGAGGGGGAGCTACTTCACAGAAATTAACTACCAATGACGCTTTATCATATTTGAAGGAAGTGAAAGACATGTTTCATGACCAAAGAGAAAAATATGACGTGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTGCTGGTGTCATAGCAAGAAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACGTTTTGAACATGTACCGCAAAGAGCACAAGGATATCGGTGAGGTGTATAGTGAGGTTGCTACCCTTTTTGAGGACCACGTGGATTTACTTGAGGAGTTTACTAGATTCTTACCAGATACCTCTGCAGCACCTTCAACACAGCATGCTCCTTATGGTCAAAATACATTTCCACGTTTTATTGAGCGAGGTTCTACAGCACCCATGATACGGCCAATGCAAGTGGACAAGGCAATAAGCTTGCTTAATTCTCATGATCGTGATCCAAGTGTTGATCTTCCTGAACTGGATGATGACAAAGCACTAATGAAATCTCACAAGGAGCAGAGGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAAATTCGTGACCAGGATGAGAGAGAACCTGATCATGATAATAACAGGGATTTAAAATTACGATTTTCTGACAAAAAGACATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGTGGCTGATTTTGCTTCTTATGATGACAAAGATACCTTAAAGAGCATGTATAACCAAGCATTCAGTTTTTGTGAGAAAGTTAAGGAAAAGTTGGGCAGTTCAGATGACTACCAAGCATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAGAATTTGGTGACTGACTTACTTGGAAAGTACCCTGATCTGATGGATGAATTCAATGAATTCTTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTATGTGGTGATGGTCAATTATCCAGAACATTAAAGTTGGAGGACAAAGACAAAGACCATAAGCGTGAGATGAATGGAGCTAAAGACAAGGAAAGACACCGGGAGAAATACTGGGGAAAATCCATTCAAGAACTGGACTTAAGTAACTGTCAACTTTGTGCTCCAAGCTATCGTCTTCTGCCAGAAGATTATGAAGAAAGCTTGTTTAGATGTGAGGATGACAGATTTGAGCTGGACATGTTATTAGAATCTGTAAGCTCAGCTGGCAAATGTGCAGAGGAGTTGTATAATAGCATTAATGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGTGCTCTAAATTTAAGGTGCATTGAACGCCTGTATGGAGATCATGGACTTGATGTTCTGGACATATTACGAAAAAATCCAACTCATGGACTTCCTGTGATATTGACTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTTGATCACCGGAGCTTCTATTTCAAACAACAAGATTCAAAGAACTTGAGTACTAAGTCTTTGGTGGCTGAAATCAAAGAAAAGAAAGCAAAGCAGCAGAAAGAGTATGATATTCTTCAGGCTATCGCTTCTGGAAATAAACATCCTCTAATCCCACATATAGAGTTTGAATATTCGGATGTCGGAATTCATGAGGACCTATATAAACTTATTCGTTATTCATGTGAGGAGGTCTTCTCAAGTAAAGATATGTCAAGTAAAATTATGAGACTTTGGACTACCTTTTTGGAGCTGATACTTGGTGTTCCCTCTCGTACTCAAGGGACAGAAAATGTGGAGGACAGGAAAACTGGGCAACGTGATGCCCATTTTGTTGCATCAAATGCAGGAGGTGATGGAAACTCCCGCAGAGACTCGATTCAAATGAATTCAAGGTGGCCAAAATCTGATAATGAACTGGATGGTAGAGTAAATGAGGCAATCAATGGTTCACAGGCTAGTTTAGCAGCCATTGACAAAGAAAATGCACCTGTTGACTGTGACCGTGCTTGTAGAGATGATCCTCTAATGGATAAAGGGAAGAACTATGCAGATTGTAGTGAAAAAGTCTCTGGGTTTAGTAAGCAGATTGCTTCTGATGAGCAACCAACCATCAATAATAATTCAATTGCAGTTAGAGGAGAAGCTAGCATGACCAAGACCAGCTTAGAAATTACTTCAGGCGGTGATGATGGTGTTGCCATTTCTCAGGGTGGTAATGGACCTTTTATGGAGGGACGGGATATTGCTCCTCCACTTCCACTAGCCAATGGAGTGCTTATTGAAAGCACTAAAGTCAAAAGCCATGAAGAACCTGCTGGTCCTTACAAAGTTGAAAAGGAGGAGGGTGAATTATCACCCAATGCTGACTCAGAGGAGGATAATTTTGTTGGGTATGGAGACTCCAGTGGGCAGGCACTGTCTAATTCAAAGCATGATATTGAAAGAGGAAATTATAAATCTAGAAATGGGGAGGAAGAATGCTGTCCCGAGGCTGGAGGTGATAATGATGCAGTTGCTGATGATGAGGACAGTGACAATGTTTCTGAAGCTGGTGAAGATGCCTCAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGAGAAGAGCATGAGGAGGATGAAGATATAGAACGTGATGATGTTGAGGGTAAGGCTGAGAGTGAAGACGAAGCTGAGGGCATATGTGACGCACAATCCGCTGGAGGAGAGGGCTCATCATTACCATTATCAGAAAGGTTCCTTTTGTCTGTAAAGCCTCTCACAAAGCGTGTTTCCGCAGTTTCACTCGGTGGGGAAAGAAATAATTCCAGGGTCTTCTACGGAAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCAAATACTTTATGAAAGGATCTCATTAGCGAAAAAGTATTCATTGAGTGCTGAAACAAAATGGAAAGCAACAAAGGAGGCTTCTTCCCCAGATCCTTATTCAAGATTTATGAATGCACTTTACAACTTGCTTGATGGCTCTGCTGACAATGGAAAGTTTGAAGATGAGTGCCGAGGAATAATTGGAAACCAGTCATATATATTATTCACATTGGACAAGTTGATATATAAGTTGGTCAGACAGCTTCAAACAGTTGTAACGGATGAGATAGACAATAAGCTTCTCCAATTGTATGAGTATGAAAAGTCGCGGAGACCTGGGAAATTAATCGATTCAGTCTATTATGCAAATGCACGTGTCATCCTTCATGATGAGAATATATATCGTTTTGAATGCTCATGTTCTCCCTGGCAAGTGTTCATTCAGCTGATGGACAATATGAATGAAAAGCCTGAGGTGTTTGCTGTTTCAATTGATCCAAAATTTTCCTTTTATCTGTATAATGATTTTCTGTCTGTCTCTCCTGGGAAAAAGGAACCCCACGGCATCATACTGCAAAGAAACAAGCGCAGATATGGAGATCTAGATGAACTTTCATCTATGTGCTTAGCCACTGAAGGTGTTAAAATAATAAATGGATTGGAATGTAAGATATCTTGCAACTCGTCCAAGACTTGTTCTCACGACACCATTTGGAGCTTGGATTCTGTAATCTGGATGCTGTATTCATGTCATTTCTATGATCTCCTACATGCTGTATACGAACTCTCTCGTGCTGTTTTATTTATTTACTGGTCTCATTTGCAGATCTCCTATGTTCTGGACACGGAGGATTTTTTCTTCCGCCCCAGAAGGCAAAGAAGAACATCATCAGGACCACATCGTCCCAGCATCATTGATCTAGACAGGAAAGATTTCTCAGATTCTTATCAGTTTCATAATTTTCTGCCCTCAGTGTGA 3996 0.4074 MGTEDKYSDPLALSAAYFPEKIYQLYGLSQIPGGGGGGGGVGGGATSQKLTTNDALSYLKEVKDMFHDQREKYDVFLEVMKDFKAQRTDTAGVIARKRFQNDEHVYKSFLDVLNMYRKEHKDIGEVYSEVATLFEDHVDLLEEFTRFLPDTSAAPSTQHAPYGQNTFPRFIERGSTAPMIRPMQVDKAISLLNSHDRDPSVDLPELDDDKALMKSHKEQRKRVDKESRDRKIRDQDEREPDHDNNRDLKLRFSDKKTSVKKAEGFGLVADFASYDDKDTLKSMYNQAFSFCEKVKEKLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLCGDGQLSRTLKLEDKDKDHKREMNGAKDKERHREKYWGKSIQELDLSNCQLCAPSYRLLPEDYEESLFRCEDDRFELDMLLESVSSAGKCAEELYNSINENKINMEAPICIEDHFSALNLRCIERLYGDHGLDVLDILRKNPTHGLPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEKKAKQQKEYDILQAIASGNKHPLIPHIEFEYSDVGIHEDLYKLIRYSCEEVFSSKDMSSKIMRLWTTFLELILGVPSRTQGTENVEDRKTGQRDAHFVASNAGGDGNSRRDSIQMNSRWPKSDNELDGRVNEAINGSQASLAAIDKENAPVDCDRACRDDPLMDKGKNYADCSEKVSGFSKQIASDEQPTINNNSIAVRGEASMTKTSLEITSGGDDGVAISQGGNGPFMEGRDIAPPLPLANGVLIESTKVKSHEEPAGPYKVEKEEGELSPNADSEEDNFVGYGDSSGQALSNSKHDIERGNYKSRNGEEECCPEAGGDNDAVADDEDSDNVSEAGEDASGSESAGDACSREEHEEDEDIERDDVEGKAESEDEAEGICDAQSAGGEGSSLPLSERFLLSVKPLTKRVSAVSLGGERNNSRVFYGNDDFFVLFRLHQILYERISLAKKYSLSAETKWKATKEASSPDPYSRFMNALYNLLDGSADNGKFEDECRGIIGNQSYILFTLDKLIYKLVRQLQTVVTDEIDNKLLQLYEYEKSRRPGKLIDSVYYANARVILHDENIYRFECSCSPWQVFIQLMDNMNEKPEVFAVSIDPKFSFYLYNDFLSVSPGKKEPHGIILQRNKRRYGDLDELSSMCLATEGVKIINGLECKISCNSSKTCSHDTIWSLDSVIWMLYSCHFYDLLHAVYELSRAVLFIYWSHLQISYVLDTEDFFFRPRRQRRTSSGPHRPSIIDLDRKDFSDSYQFHNFLPSV 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1356 1331 MobiDBLite consensus disorder prediction 679 695 - -
Lele16g1356 1331 Pfam Sin3 family co-repressor 427 467 IPR013194 -
Lele16g1356 1331 Coils Coil 569 589 - -
Lele16g1356 1331 SUPERFAMILY PAH2 domain 44 96 IPR036600 GO:0006355
Lele16g1356 1331 MobiDBLite consensus disorder prediction 824 966 - -
Lele16g1356 1331 MobiDBLite consensus disorder prediction 890 910 - -
Lele16g1356 1331 MobiDBLite consensus disorder prediction 653 701 - -
Lele16g1356 1331 SMART hdac_interact2seq4b 413 473 IPR013194 -
Lele16g1356 1331 MobiDBLite consensus disorder prediction 194 249 - -
Lele16g1356 1331 PANTHER SIN3B-RELATED 48 96 IPR039774 GO:0003714
Lele16g1356 1331 FunFam Paired amphipathic helix protein SIN3 277 351 - -
Lele16g1356 1331 Gene3D Paired amphipathic helix 96 152 IPR036600 GO:0006355
Lele16g1356 1331 SUPERFAMILY PAH2 domain 96 150 IPR036600 GO:0006355
Lele16g1356 1331 MobiDBLite consensus disorder prediction 873 889 - -
Lele16g1356 1331 Pfam C-terminal domain of Sin3a protein 999 1236 IPR031693 -
Lele16g1356 1331 ProSiteProfiles PAH domain profile. 48 151 IPR003822 GO:0006355
Lele16g1356 1331 Gene3D Paired amphipathic helix 278 351 IPR036600 GO:0006355
Lele16g1356 1331 MobiDBLite consensus disorder prediction 824 845 - -
Lele16g1356 1331 FunFam Paired amphipathic helix SIN3-like protein 94 151 - -
Lele16g1356 1331 SUPERFAMILY PAH2 domain 283 349 IPR036600 GO:0006355
Lele16g1356 1331 Gene3D Paired amphipathic helix 54 95 IPR036600 GO:0006355
Lele16g1356 1331 Pfam Paired amphipathic helix repeat 302 346 IPR003822 GO:0006355
Lele16g1356 1331 Pfam Paired amphipathic helix repeat 104 148 IPR003822 GO:0006355
Lele16g1356 1331 ProSiteProfiles PAH domain profile. 280 349 IPR003822 GO:0006355
Lele16g1356 1331 MobiDBLite consensus disorder prediction 198 249 - -
Lele16g1356 1331 MobiDBLite consensus disorder prediction 928 953 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1356 Lele-ChrLele16 7726811 7739114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1356 37 96 WRKY Transcription Factor Family AT4G12020 60.000 6.66e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele16g1356 Sin3a_C 2.5e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1135 13 22073172 22083875 Lele16g1356 16 7726811 7739114 hybridization
Lele14g1032 14 20380306 20392615 Lele16g1356 16 7726811 7739114 hybridization