Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1343 ATGTCGCAAGGCTATGCTATTGAGCTCTACTTCGACCCTGCGCTTGAAAACCAGGTCTTGAAGGCCTGGAATGTACTGGCTCGCCGACAAATCAGTACCCAACTCATCGAAATTGAGTCGCGCCCCCACATCACTCTTTTCTCAGGCCAATTCATCGATCCTATCAAGGTTGAATTCATTATCAAGAATTTCGCAGCCAAGCTGGAATCTCTGCCTCTAACTTTCTCTTCCATTGGGAGCCTTCCAAATGACAGCAATGTCCTTTTTCTTGCACCCGCGCCCTCAATCTCGCTACTTCAGTTCCAATCGCAATTGTGTGATGCATTGAAGAAAGAAGGCATAGAGGTAGGCGAGGAATATCGCCAGGATTCTTGGATTCCTTATTGTTCGGTTGCGCAGGAAGTGCCAAAATCTAGGATGGCCGAGGCATTCTGTGTCTTACGAGACTTAAAACTGCCAGTCACTGGGTATGCTACAGATATCGGACTGGTGGAGTTCTCGCCTGTTCGTGAGCTCTTCTCATATGTGCTGGGCAACACAGTAGAAACATAA 552 0.4764 MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSGQFIDPIKVEFIIKNFAAKLESLPLTFSSIGSLPNDSNVLFLAPAPSISLLQFQSQLCDALKKEGIEVGEEYRQDSWIPYCSVAQEVPKSRMAEAFCVLRDLKLPVTGYATDIGLVEFSPVRELFSYVLGNTVET 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1343 183 PANTHER - 1 181 - -
Lele16g1343 183 SUPERFAMILY LigT-like 4 166 IPR009097 -
Lele16g1343 183 Pfam 2'-5' RNA ligase superfamily 41 164 - -
Lele16g1343 183 Gene3D Cyclic phosphodiesterase 5 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1343 Lele-ChrLele16 7640587 7641138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1343 1 183 Calmodulin-binding Proteins AT5G40190 71.038 3.31e-91 262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1147 13 22160496 22163632 Lele16g1343 16 7640587 7641138 hybridization
Lele14g1044 14 20468524 20469075 Lele16g1343 16 7640587 7641138 hybridization