Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1336 ATGTCGAGAAATGTGTATGAGCGGTTTTTCAACCACACCCATTTGAAGATGGCTTGGATTCCGTATCAAATCCAGGAAAAAGATGGGTATTTGAACTACACACCACCTGTTTTGCCTTCATATCCATCCCCATTCCCAGGTTCTATCAGCAACGAATCAACGTCGTCTTCGTCTTCACCTCCGTCCGGCGGCACTACTAGGAATAGTCCGGCTGTTCTTTTCATTATAGTGATTCTCGCCGTGCTGTTTTTCGTATCCGGTCTGCTTCATCTTCTTGTCAGATTTCTCGGGAAGCACCCATCAGCTGGTCCATCTGCTCAATCTAATGGACACCAGGACATTTCTGGCTCCGATGCTCTGCAGAGGCAGCTTCAACAGCTTTTCCATCTCCATGACTCAGGGCTGGATCAAGCTTTCATTGACGCGCTTCCTGTTTTCCAGTATAGAGAAATTGTGGGTCTGAAAGAACCATTTGACTGTGCTGTTTGTCTCTCTGAATTCTCTGAAAATGATAAGCTCAGGCTGCTTCCTACCTGCAGCCATGCTTTTCACATTGATTGCATAGACACCTGGCTCCTATCCAACTCGACATGTCCACTCTGTAGAGGAGCCCTGTACGCCCCAGGACTCTCTGCGGAAATCCCCATGTTTTATTTTGATGATATGAGGGAAGAAGATGGGTGCCCTTGCAATGGAGAAGGTGGGGTAACTACCAGACAAAAAGCTGTGGAAATTGAAGAAATTGTAGAGAAAGCAGTTCTCCCTGTAAGACTTGGTAAATTCAGAAGGCTTGATATGGATGCAGGGGATAATGCAGGAGGAGAGACAAGCAGCGGTAATCTTGATGCGAGAAGATGTTTCTCAATGGGGTCTTACCAGTATGTGCTGGGCAACTCGGACCTGCGAATTACCTTGGACGGGGATAGAAAGCTCTCGGAGTCGGAAGGAACAGAAGAGACAGATAAGCTTTCAATGGAGGGTGATAAGGAAGCCAAAAAGATTACTAGTGTGAATAAGGGTGAGAGCTATTCTGTCTCAAAAATCTGGTTGTGGTCGAACAAGGGAAAATTCTCTAGTTCTTCGAATGATCAGATGGGCATGCCATCTTCTCTAAGCACAGATTTACCATGGATGAGAACAACAGAAGGGACCTAA 1155 0.4615 MSRNVYERFFNHTHLKMAWIPYQIQEKDGYLNYTPPVLPSYPSPFPGSISNESTSSSSSPPSGGTTRNSPAVLFIIVILAVLFFVSGLLHLLVRFLGKHPSAGPSAQSNGHQDISGSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYREIVGLKEPFDCAVCLSEFSENDKLRLLPTCSHAFHIDCIDTWLLSNSTCPLCRGALYAPGLSAEIPMFYFDDMREEDGCPCNGEGGVTTRQKAVEIEEIVEKAVLPVRLGKFRRLDMDAGDNAGGETSSGNLDARRCFSMGSYQYVLGNSDLRITLDGDRKLSESEGTEETDKLSMEGDKEAKKITSVNKGESYSVSKIWLWSNKGKFSSSSNDQMGMPSSLSTDLPWMRTTEGT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1336 384 CDD RING-H2_PA-TM-RING 159 202 - -
Lele16g1336 384 MobiDBLite consensus disorder prediction 357 384 - -
Lele16g1336 384 MobiDBLite consensus disorder prediction 44 64 - -
Lele16g1336 384 SUPERFAMILY RING/U-box 139 207 - -
Lele16g1336 384 MobiDBLite consensus disorder prediction 310 340 - -
Lele16g1336 384 SMART ring_2 160 201 IPR001841 -
Lele16g1336 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 65 349 - -
Lele16g1336 384 MobiDBLite consensus disorder prediction 310 336 - -
Lele16g1336 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 207 IPR013083 -
Lele16g1336 384 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Lele16g1336 384 Pfam Ring finger domain 159 202 IPR001841 -
Lele16g1336 384 FunFam RING-H2 finger protein ATL46 122 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1336 Lele-ChrLele16 7605253 7606407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1336 87 361 C3H Transcription Factor Family AT2G18650 42.345 1.06e-57 192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1155 13 22208366 22209517 Lele16g1336 16 7605253 7606407 hybridization
Lele14g1050 14 20503116 20504258 Lele16g1336 16 7605253 7606407 hybridization