Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1333 ATGTATAGAATAATATCCACGCCGGCCCATAGATTCCGCCAATTCGGGCGACTCCAAGGAAAGCCCTCCGGCGCCACCACCGACGAGGAACACGCGTACCTCATCCTATGGCGTTATCAGATCCTCGACCCCGACAGCGACATCGTTTCACGTTGGAACAGAATCTTCCTCGTCACCAGTCTCGTCGCGCTTTTCATCGACCCTCTTTACTTATATCTCCCCTTCATCGGTGGCCCCGGTTGCTTGCAAACCAATACAGAATTGAGCGTCACCGTCACTCTTCTCCGCTCTTTCTCTGACCTTTTCTACGTTCTCCACATGATCATGAAATTTCGGACCGCCTTCGTCGCCCCAAATTCTAGGATTTTCGGTCGGGGCGAGCTGGTTACCGATGCCCGAGAAATTGCCAGACGCTACTTGAAGTCTGATTTTGTTATCGATCTCGCCGCAACGCTTCCACTGCCCCAGATTGTCATTTGGTTAGTGCTTCCATCGTCCTCGGCTGACCATGCCCACATCACTCTTGCTCTTTTCGTGCTTATTCAGTATGTTCCTAGGCTCTTTCTTATCTTCCCGTTGAACAAACGGATTATCAAAACCTCTGGTGTTGTTGCCAAGACTCCATGGACTGGAGCTGCATATAATCTTCTACTCTACATGCTAGCTAGTCATGTTATTGGAGCAACTTGGTATTTATCCGCAATAGCACGACAATTAAACTGTTGGACTGAAGAGTGCAGAGCTGAGAACCAATTAGAAACCCTGTCTTGCCTTATAACTTATCTTGATTGCGGGAGTTTGGCCAACCCTGATAGGCAATACTGGCTAAATGTCACCAACGTTGTTAAGAGTTGCGATGTAAAGAGCGGAGATAACAAATATTCATTTGGGATGTTTCAAGATGCTTTCAGGAAGGCAGTTGCTACTGGCAGTTTCAGTGAGAGATACTTCTATTGTCTTTGGTGGGGTATCAGAAATTTAAGCTCATATGGACAGAACTTGGACACCACTGTGTTTATCGGGGAAACACTTTTTTCCATCATGCTATGCGTTGTTGGATTGGTTCTCTTTGCACTTTTGATTGGAAACATGCAGACATATTTAGAGTCAATGTCAGCAAGACTTGAAGAATGGAGGATTAGGAAGAGAGATACCGAGGAATGGATGAGGCATCGCCAGTTACCTCCAGATTTGCAGGAACGTGTCCGTCGCTTTGTTCAATATCAATGGCTTGCAACAAGAGGAGTCGATGAGAAATCCATTCTGCTTTCATTACCTCTGGATCTTCGTCGTGAAATTCAACGCCACTTGTGTCTTGCCCTCGTTCGGCGTGTCCCATTCTTTTCACAGATGGACGATCAACTGCTTGATGCCATTTGTGAACACCTTGTGTCGTCCCTAAGCACTGAAGGCACCTACATTTTTCGGGAGGGTGATCCGGTGAATGAAATGGTGTTCATCATTAGAGGGCAACTAGAGAGTTCCACGACTAATGGTGGAAGATCCGGGTTCTTCAATTCCATTACCCTCAGACCTGGAGATTTCTGCGGCGAAGAACTATTAACATGGGCCTTAATGCCAAACTCTAGCTCAAACCTGCCTTCTTCAACTCGAACTGTTAGGGCTCTTACTGAAGTCGAAGCTTTTGCGTTACAGGCAGAGGATCTCAAAGGTGTGGCCGCTCAGTTCAAGCGCCTTCACAGTAAGAAACTTCAGCATGCTTTTAGGTATTATTCCCATCAATGGAGGGCCTGGGCAGCTTGCTTAATAGAGGCTGCTTGGAGAAAGTTTAAGAAACGCAAAGCATCTAGGGACTTATCCCTGAAAGAGGACCTCTACTATATTGCAAGACCAGAGGGAGAAACTAGTTACGGCGACCTGCTAGGGCTTGATTTGGAGGGCTCATCAGGGGACGCTGCAAATGGCACTCAAGCTCTTGGGGCTACTGTTATGGCTTCCAAGTTTGCTGTAAATGCAAGGAAAGGGACTACTACCGGCCATAAAGCTCAAGGCAGCGATCCTGTGCCCCAGTTGTTCAAGCCAGATGAACCTGATTTCTCAGTGCTATAG 2070 0.4715 MYRIISTPAHRFRQFGRLQGKPSGATTDEEHAYLILWRYQILDPDSDIVSRWNRIFLVTSLVALFIDPLYLYLPFIGGPGCLQTNTELSVTVTLLRSFSDLFYVLHMIMKFRTAFVAPNSRIFGRGELVTDAREIARRYLKSDFVIDLAATLPLPQIVIWLVLPSSSADHAHITLALFVLIQYVPRLFLIFPLNKRIIKTSGVVAKTPWTGAAYNLLLYMLASHVIGATWYLSAIARQLNCWTEECRAENQLETLSCLITYLDCGSLANPDRQYWLNVTNVVKSCDVKSGDNKYSFGMFQDAFRKAVATGSFSERYFYCLWWGIRNLSSYGQNLDTTVFIGETLFSIMLCVVGLVLFALLIGNMQTYLESMSARLEEWRIRKRDTEEWMRHRQLPPDLQERVRRFVQYQWLATRGVDEKSILLSLPLDLRREIQRHLCLALVRRVPFFSQMDDQLLDAICEHLVSSLSTEGTYIFREGDPVNEMVFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSSSNLPSSTRTVRALTEVEAFALQAEDLKGVAAQFKRLHSKKLQHAFRYYSHQWRAWAACLIEAAWRKFKKRKASRDLSLKEDLYYIARPEGETSYGDLLGLDLEGSSGDAANGTQALGATVMASKFAVNARKGTTTGHKAQGSDPVPQLFKPDEPDFSVL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1333 689 CDD CAP_ED 447 578 IPR000595 -
Lele16g1333 689 Gene3D Helix hairpin bin 371 438 - -
Lele16g1333 689 FunFam Cyclic nucleotide-gated ion channel 1 445 563 - -
Lele16g1333 689 PRINTS EAG/ELK/ERG potassium channel family signature 316 333 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g1333 689 PRINTS EAG/ELK/ERG potassium channel family signature 360 369 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g1333 689 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g1333 689 PRINTS EAG/ELK/ERG potassium channel family signature 410 417 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g1333 689 PRINTS EAG/ELK/ERG potassium channel family signature 342 353 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g1333 689 MobiDBLite consensus disorder prediction 662 689 - -
Lele16g1333 689 Pfam Ion transport protein 51 374 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele16g1333 689 Pfam Cyclic nucleotide-binding domain 470 561 IPR000595 -
Lele16g1333 689 Gene3D - 55 370 - -
Lele16g1333 689 FunFam Cyclic nucleotide-gated ion channel 1 374 438 - -
Lele16g1333 689 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 28 686 - -
Lele16g1333 689 SUPERFAMILY Voltage-gated potassium channels 43 369 - -
Lele16g1333 689 Gene3D Jelly Rolls 445 565 IPR014710 -
Lele16g1333 689 SUPERFAMILY cAMP-binding domain-like 376 572 IPR018490 -
Lele16g1333 689 ProSiteProfiles cAMP/cGMP binding motif profile. 447 577 IPR000595 -
Lele16g1333 689 SMART cnmp_10 447 578 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1333 Lele-ChrLele16 7586750 7589352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1333 33 688 Ion Channels AT5G14870 66.716 0.0 958