Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1327 ATGTTGTTCCTCCGAAATGGCGACATCAGATTTGGAGAGAAGAAGCGTCGCCTCACTCCCGAGCAGGTTCATCTGTTGGAGAAAAGCTTTGAGGCAGAGGACAAACTGGAGCCAGTAAGGAAGACCCAGTTGGCCAATAAGCTGGGATTGCAGCCAAGGCAGGTTGCCGTGTGGTTTCAGAACCGCAGGGCTCGGTGGAAGACCAAGCAACTTGAAAGGGATTTTGATATTCTCAAGTCTTCCTACGACTCACTCCTTTTAAAATATGAATTCACTGTGAAGGAGAATGAAAAGCTTAAATCCGAGGTGGTATCACTGGATGAGAAGCTTAAAGCAAAGGATGTACCTAGAGCACCGATATTTGATCAAACGATTGACCCTTTTCCAGTGGATACATCCCAATTTTCAGCCCTACCATTCAGCACAAGGGTGGAGGATCGTCTGAGCACGGGAAGTGGTGGAAGCTCAGTTGTGGACATGGATAGCTCACAGCTTGTTGTGGATTCATACTTTCCGGTGGACAGTTATACCGGATACATGGCCTGTGTCATTGGGGTTCAGTCGGAGGATGATGGTGGGAGTGACGATGGACGGAGCTACTTCTCAGACGTGTTTGTGGCCCCTGAATCACATGGCCAAAACCACGAGGCAGGGGATGGATTGGGGGAAAGAATAGCAGAACTTCCGGTTCAGGTGGAGTAG 702 0.4915 MLFLRNGDIRFGEKKRRLTPEQVHLLEKSFEAEDKLEPVRKTQLANKLGLQPRQVAVWFQNRRARWKTKQLERDFDILKSSYDSLLLKYEFTVKENEKLKSEVVSLDEKLKAKDVPRAPIFDQTIDPFPVDTSQFSALPFSTRVEDRLSTGSGGSSVVDMDSSQLVVDSYFPVDSYTGYMACVIGVQSEDDGGSDDGRSYFSDVFVAPESHGQNHEAGDGLGERIAELPVQVE 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1327 233 SUPERFAMILY Homeodomain-like 14 80 IPR009057 -
Lele16g1327 233 PRINTS Lambda-repressor HTH signature 40 49 IPR000047 GO:0003677
Lele16g1327 233 PRINTS Lambda-repressor HTH signature 49 65 IPR000047 GO:0003677
Lele16g1327 233 SMART HOX_1 12 73 IPR001356 GO:0003677
Lele16g1327 233 CDD homeodomain 14 70 IPR001356 GO:0003677
Lele16g1327 233 Gene3D - 12 76 - -
Lele16g1327 233 ProSiteProfiles 'Homeobox' domain profile. 9 69 IPR001356 GO:0003677
Lele16g1327 233 Pfam Homeobox associated leucine zipper 69 110 IPR003106 GO:0006355|GO:0043565
Lele16g1327 233 FunFam homeobox-leucine zipper protein ATHB-6-like 17 63 - -
Lele16g1327 233 Coils Coil 89 109 - -
Lele16g1327 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 12 146 IPR045224 GO:0003700
Lele16g1327 233 ProSitePatterns 'Homeobox' domain signature. 44 67 IPR017970 GO:0000981|GO:0006355
Lele16g1327 233 Pfam Homeodomain 14 67 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1327 Lele-ChrLele16 7557556 7559793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1327 13 226 Homeobox Transcription Factor Family AT3G01470 53.456 6.99e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele16g1327 Homeodomain 1.8e-17 CL0123