Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1319 ATGCTCTCTCTGCAATTCATCGCCCCCGGAGCTCCCGATCGCCCTTTGCCATTTCTGCCGGGCAGCAATTCTTCCTCGTTTTGGGCTAACGATTGGTGCTTGCTCAAAGCGAGTCCTCCAATTGCTGGTAGAAACAAGCTTCGATTCAATGGCGGAACTGTTAGGGTTTTGGCCATGTCTGAGAATTATTCTACCTTCAAGATGAATCTAAACGAGTATCTGGTCACTCTGGAGAAACCACTTGGTATCCGGTTCGCTGTCACTGCTAACGGCAAAATCATCGTTCACTCCCTTAAGAAAGGGGGTAATGCAGAGAAGTCGAGAATTATAATGGTAGGGGACACTTTGAAGAAAGCTGGTGATTCATCGCAAAATAGGCTTGCTGAGATGAAGAACGTTGAAGATGCGCAGAATATTTTAAAGAAGACTAATCCTTTAAGCATGGTTCTTGAGAGGCCCAGATCTCCTTTTCCTATTCATCTACTGCACAAGATAAATGATTCTGAAGTACAATTCAATAGAGGTCAAGTTCCTATTGCCACCTGGAACAAGACATTATTGGCTACAAATTTACAGCCATCTATTGAAAGTTCTGGGAATAGTGGTTTTTCTACCTTCACCTCAAAGTTTCTAACACCAAAAGGAAGCAAATTATTGGGCAATCCAGATGAACATGTCATCCTCAATGAGGAGATAAAACTCTTTAGTGATGAAGAGTATGATGAAGGAGAGTGGGCTCATGGAGGTTTCCCTCTTGAGGAATATGTCAAAGCTCTGGATCGTTCAAAAGGCGAGATGTACTATGATCACTCCCTTGGTATGCGCTATACTAAGATCTCAGAGCAAATATATGTGGGATCATGTATACAAACAGAAGCTGATGTGGAAACATTGTCAAAAGTTGAGGGAGTCACTGCTGTTCTGAACTTCCAAAGTGCAACTGAAGCTGAGAATTGGGGAATCGATTTCAAATCTATTAGTGAATCATGTCAAAGGAATAATATCCTTATGATAAACTATTTTATACGGGCGGGAGATTCTTATGATATGAGGAAGAAATTACCATTTTGTGTGGGGCTTCTCTTGCGGTTGCTGAGGAAAAACCATCGCGTTTTTGTTACATGCACTTCTGGATTTGATCGATCTCCTGCATGTGTGATTGCATACCTGCACTGGATGACAGATCTTTCCCTTCATGCTGCTTATACATGGGTCACTGGGATGTACACATGCAGGCCTGACAGACCAGCAATTGCCTGGGCAACATGGGATCTTATAGCTATGGTAGAAAAGGGTAACCACGATGGACCCCCTACACATGCTGTCACATTTGTATGGAACGAGAGTGAGGGACAGGATGTAACATTGGTGGGAGATTTTACTGGAAATTGGAAAGAACCAATCAAAGCAATACACAAGGGGGGAATAAGATATGAAGTAGAAGTTAAACTTCCTCAAGGAAAGTACTACTATAAGTTCATTGTTAATGGAAACTGGAGGCATTCAAATGCTTCACCGGCAGAAAGGGATGAAAGGGGGAACGTTAACAACGTAATTGTGATTGGTGACACTGCTAGTGTTAGGCCTTCTGTTCAACACCAGCCGAAAGATGTCAACGTTGTGAAAGTGATCGAGAGGCCTCTGGATGAAAAAGAGCGGTTTAAGCTGGCGAAAGCAGCTCGCTGCATTGCTTTCAATGTCTGTCCCATTACATTAGCTCCCAAGTCGCAAGTAGTTGCATAG 1743 0.4303 MLSLQFIAPGAPDRPLPFLPGSNSSSFWANDWCLLKASPPIAGRNKLRFNGGTVRVLAMSENYSTFKMNLNEYLVTLEKPLGIRFAVTANGKIIVHSLKKGGNAEKSRIIMVGDTLKKAGDSSQNRLAEMKNVEDAQNILKKTNPLSMVLERPRSPFPIHLLHKINDSEVQFNRGQVPIATWNKTLLATNLQPSIESSGNSGFSTFTSKFLTPKGSKLLGNPDEHVILNEEIKLFSDEEYDEGEWAHGGFPLEEYVKALDRSKGEMYYDHSLGMRYTKISEQIYVGSCIQTEADVETLSKVEGVTAVLNFQSATEAENWGIDFKSISESCQRNNILMINYFIRAGDSYDMRKKLPFCVGLLLRLLRKNHRVFVTCTSGFDRSPACVIAYLHWMTDLSLHAAYTWVTGMYTCRPDRPAIAWATWDLIAMVEKGNHDGPPTHAVTFVWNESEGQDVTLVGDFTGNWKEPIKAIHKGGIRYEVEVKLPQGKYYYKFIVNGNWRHSNASPAERDERGNVNNVIVIGDTASVRPSVQHQPKDVNVVKVIERPLDEKERFKLAKAARCIAFNVCPITLAPKSQVVA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1319 580 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 58 573 - -
Lele16g1319 580 SUPERFAMILY E set domains 439 522 IPR014756 -
Lele16g1319 580 Pfam Glycogen recognition site of AMP-activated protein kinase 442 523 IPR032640 -
Lele16g1319 580 CDD DSP_laforin-like 274 420 IPR045204 GO:0019203|GO:0046838
Lele16g1319 580 CDD E_set_AMPKbeta_like_N 442 521 - -
Lele16g1319 580 Gene3D - 71 152 IPR036034 GO:0005515
Lele16g1319 580 SUPERFAMILY PDZ domain-like 59 161 IPR036034 GO:0005515
Lele16g1319 580 Gene3D Protein tyrosine phosphatase superfamily 268 532 IPR029021 -
Lele16g1319 580 Gene3D Immunoglobulins 429 525 IPR013783 -
Lele16g1319 580 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 267 407 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1319 Lele-ChrLele16 7508060 7513060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1319 139 576 Protein tyrosine phosphatase (PTP) family AT3G01510 65.256 0.0 614