Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1306 ATGGCTAGGAGCTGGCTTATTGATGTCGGAGGGTTTGCAAAGAAAGTGAAAAGCAGTTCTTTGCCCTCAGCTGAGCAAATCAAAGACTGTGGGGCATATCGTGAATGTCCAAATTGTCATGGGCATATTGATAATAGTGATGTTTTGCCTGAGTGGCCTGGGTTTCCTGCTGGTGTAAAATTTGATCCTTCTGATATAGAGCTCTTAGAGCATTTAGCAGCAAAATGTGGCATTGGAAGTGCAGAGCCACACATGTTTATCCATGAGTTCATTCCTACGCTGGAAGGTTCTGAGGGTATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAAAAAAGATGGGAGTAGTGTCCATTTCTTTCATAGAACAATTAATGCCTATGCATGTGGTCAACGAAAGCGTCGGAAGATTCATCATCAACATGGTGCAACTGAGGAGCATGTACGCTGGCACAAGACTGGTAAGACCAAATCTGTGATGGAAGATGGCATACACAAAGGCTTTAAAAAGATCTTGGTTCTTTATATAAGACCTGAGAAAGGTTCAAAGCCATATAAATCCAATTGGGTGATGCATCAATACCATCTGGGGACTGGAGAAGAGGAGAAGGAAGGTGAATATGTAGTCTCAAAGATTTTTTGTCAAAAGAAGCCGCTCGAGAAAAATGAGGAGAATCCATTAGTTGAAGAATTAGATAATATGACATCACGAACAAGTCCAAGAACCCCAAATCCAAATCCCCGAAATCCACCTCGACCAGGAAATTCTGCTGACTGTGATGATAATTTCGATGAGAAAGTACTCCTGCCATTCAACAGGGATGCTGAGTCTATCCCTCGAGAGCCAAGTGCCCTACTGATTGACGTCCAGGATGAGGACCATACAAGTGGCCCTGCATGGTTGGCTGGTGAATCTCAGGCAGTTGAAAACTGTGACTTTGATGGCTTGGATGACATATTATTATGCAAGGAGATCTTAGATTCTTCTGATCAATTAAATGATTCTGGAATGAACTCCACCACTGTCAATGGCTTTGCCGGCAACACAAACTTGTTAGCCGGAAATGGCAATGCATCATTTGGAATATCTGACCTGGATAACCTGGAATTGGGTCCTCCTCCAGATTTTCTACTTTCTGACTTGCAATTTTGTTCTCAAGACAGTATACTTGACTGGATAGACAGATTATGA 1194 0.4255 MARSWLIDVGGFAKKVKSSSLPSAEQIKDCGAYRECPNCHGHIDNSDVLPEWPGFPAGVKFDPSDIELLEHLAAKCGIGSAEPHMFIHEFIPTLEGSEGICYTHPENLPGAKKDGSSVHFFHRTINAYACGQRKRRKIHHQHGATEEHVRWHKTGKTKSVMEDGIHKGFKKILVLYIRPEKGSKPYKSNWVMHQYHLGTGEEEKEGEYVVSKIFCQKKPLEKNEENPLVEELDNMTSRTSPRTPNPNPRNPPRPGNSADCDDNFDEKVLLPFNRDAESIPREPSALLIDVQDEDHTSGPAWLAGESQAVENCDFDGLDDILLCKEILDSSDQLNDSGMNSTTVNGFAGNTNLLAGNGNASFGISDLDNLELGPPPDFLLSDLQFCSQDSILDWIDRL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1306 397 Gene3D NAC domain 64 220 IPR036093 GO:0003677|GO:0006355
Lele16g1306 397 MobiDBLite consensus disorder prediction 225 262 - -
Lele16g1306 397 FunFam NAC domain-containing protein 8 64 220 - -
Lele16g1306 397 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
Lele16g1306 397 SUPERFAMILY NAC domain 41 216 IPR036093 GO:0003677|GO:0006355
Lele16g1306 397 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Lele16g1306 397 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 319 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1306 Lele-ChrLele16 7388869 7392177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1306 33 221 NAC Transcription Factor Family AT4G28500 54.688 3.31e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele16g1306 NAM 2.1e-19 No_clan