Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1292 ATGCTTCACCTGAATCCCCCACCTCTTCCACACTTTGTTCATTACAAACTCATCAGAACAAACATGGCTCGTCTCGTCGCTGCTTGCTTTGTTCTTTTCTCTTTCTCTCTCATTGTTTCCTGCGTCGCAGTTCAAGACCCTGAGCTAGTTGTACAAGACGTACACAGAAGAATCAATACGTCTAGGAGAAATTTGGGGTATTTATCATGTGGAACCGGAAACCCCATTGACGACTGCTGGAGGTGCGACCCGAACTGGGAGAGGAACCGGCAGAGGCTGGCCGATTGCGCCATTGGGTTCGGCAAGGACGCCATCGGAGGAAGAAACGGTCGAGTTTATGTGGTGACAGACTCCGGCGACGACGACCCGGTGAACCCTAAGCCAGGAACTCTGAGACACGCCGTCATACAAGACGAGCCGTTGTGGATTATCTTCAAGAGAGACATGGTGATAACCCTAAAGCAAGAGCTCGTTATGAACTCCTTCAAGACCATTGACGGAAGAGGAGCAAGCGACAAGAACATGCAGGTCACCATCGCCTTCAACCACTTCGGAGAAGGCCTCGTCCAGAGAATGCCAAGGTGTAGGCACGGTTATTTTCATGTGGTGAACAATGATTATACACACTGGGAAATGTATGCGATTGGAGGGAGTGCGAATCCTACGATAAACAGTCAGGGAAATAGGTTTCTGGCACCGGATAATAGGTTTAGCAAGGAGGTGACGAAGCACGAGGATGCTGCAGAAGGAGAGTGGATGAACTGGAACTGGAGATCAGAAGGTGACTTGTTCTTGAACGGAGCTTATTTCCGGCAATCTGGAGCGGGAGCTTCTTCAAGCTACGCTAGGGCTTCAAGTCTCAGTGCGAGACCTTCTTCTCTCGTTGGCTCCATGACCATGACTGCTGGTGTACTCACGTGCAGGAAGGGAGCGCGTTGCTGA 942 0.5064 MLHLNPPPLPHFVHYKLIRTNMARLVAACFVLFSFSLIVSCVAVQDPELVVQDVHRRINTSRRNLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAIGGRNGRVYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAAEGEWMNWNWRSEGDLFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTMTAGVLTCRKGARC 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1292 313 SMART amb_all 48 236 IPR002022 -
Lele16g1292 313 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Lele16g1292 313 PRINTS Pollen allergen Amb family signature 156 172 IPR018082 -
Lele16g1292 313 PRINTS Pollen allergen Amb family signature 120 145 IPR018082 -
Lele16g1292 313 SUPERFAMILY Pectin lyase-like 172 313 IPR011050 -
Lele16g1292 313 Pfam Pectate lyase 166 230 IPR002022 -
Lele16g1292 313 SUPERFAMILY Pectin lyase-like 55 170 IPR011050 -
Lele16g1292 313 Gene3D - 172 306 IPR012334 -
Lele16g1292 313 Gene3D - 73 171 IPR012334 -
Lele16g1292 313 PANTHER PECTATE LYASE 18-RELATED 171 310 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1292 Lele-ChrLele16 7318840 7320295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1292 172 313 Polysaccharide Lyase AT4G24780 83.803 4.65e-76 237