Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1286 ATGGCTTCTTCGACTTCCCTCTCTGTGCTCCTCTTGACCACAGTCCTGTGCTGTGCGTCTGGTTTTGAGTTCCAAGTGGGAGGATCAGCAGGGTGGATGGTCCCGCCTGCGAATCAGACCGACATCTACCATGAATGGGCTTCACACAACAGATTCCAAGTTGGTGACTCCATACGGTTTAAGTACAAGAAGGACTCGGTGATGGAGGTGGATGAAGAAGGTTACAAGAACTGCAATTCCAGTCACCCAGACATGTTCTCCAACAACGGAAACACAGTGTTCAAGTTCGATCATGCGGGCTCTTTCTACTTCATCAGTGGTGCGTCTGGGCATTGTCAGAAAGGACAGAAGATGATCGTGAGGGTGCTCAATCTGGAGGAAGAGTCTCTTCCCAATCATCACCATGATAACTCTTCTTCTTCTGCTGCTGCTTTCCGTCATCAAGTTTCGCCGGTCGTCCCCAACATCTTCTTCTTTGTTTTCGCCTTTGTCGCTTCTTATAAGATCAAGACTGGGTATTTAATTTTATTATTGCATGATCATTCCTCTTCATCCGTAAGCATTTTGATTTTGGTCGCTTCCAGTTCCCGTGCCCTCCACCAGTATCGTCTCTTTTTTCTCTATTCTCTCTTGCAGACAACAATGGCGACGAGTTTGGTCAGAAGGTCACTGTCTAGGTTTTCATCTTCGCCGGCGTCCAAGTTGCTGTGCGCTAGAGCGCACGCCTCTGAAGCTCAAGCCCAGCAGGTGGAGCCCACCGCTCGCGACTCCGCCGCCTTCAAGACATTCCAAATCTACCGATGGAACCCCGAGAATCCTTCCAAGCCTCAGCTTCAGGAGTACCAGATCAATCTCCGCGAGTGTGGGCCCATGGTCCTCGACGCCTTGATCAAAATCAAGAACGAGATCGATCCCACCCTCACTTTCCGCAGGTCCTGCCGGGAGGGAATCTGCGGCTCCTGCGCCATGAACATTGATGGATGCAATGGCTTAGCTTGCTTGACCAAGATCCCTACGAGCTCTGAAACCACGATCACTCCTTTGCCTCATATGTTCGTCATCAAGGATCTCATCGTGGATATGACCAATTTCTACAATCAGTACAAGAGTATTGAACCCTGGTTGAAGAGGAAGAACCCACCCCCCGTTCCTGGTAAGGAGGTACCTCAGAGCAAGAAGGATAGGGCTAAGCTCGACGGGATGTACGAGTGCATATTGTGTGCGTGCTGTAGCACATCCTGCCCTAGCTATTGGTGGAACCCCGAGTCATATCTAGGACCCGCAGCTCTGCTCCACGCTAATAGGTGGATAAGCGACAGTCGTGATGAGTACACTAAGGAGCGATTAGATGCCATTAACGATGAATTCAAGCTCTATCGCTGCCACACCATAATGAACTGCACTCGTGCCTGTCCAAAGGGCTTGAGCCCTGGAAAGCATATCCAACATATCAAAAACCTTGAGATGGGATTGGCCAGGACTTGA 1485 0.501 MASSTSLSVLLLTTVLCCASGFEFQVGGSAGWMVPPANQTDIYHEWASHNRFQVGDSIRFKYKKDSVMEVDEEGYKNCNSSHPDMFSNNGNTVFKFDHAGSFYFISGASGHCQKGQKMIVRVLNLEEESLPNHHHDNSSSSAAAFRHQVSPVVPNIFFFVFAFVASYKIKTGYLILLLHDHSSSSVSILILVASSSRALHQYRLFFLYSLLQTTMATSLVRRSLSRFSSSPASKLLCARAHASEAQAQQVEPTARDSAAFKTFQIYRWNPENPSKPQLQEYQINLRECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPTSSETTITPLPHMFVIKDLIVDMTNFYNQYKSIEPWLKRKNPPPVPGKEVPQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLDAINDEFKLYRCHTIMNCTRACPKGLSPGKHIQHIKNLEMGLART 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1286 494 CDD OsENODL1_like 22 123 IPR041846 -
Lele16g1286 494 Gene3D - 21 127 IPR008972 -
Lele16g1286 494 ProSiteProfiles Phytocyanin domain profile. 22 124 IPR003245 GO:0009055
Lele16g1286 494 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 274 351 IPR001041 GO:0051536
Lele16g1286 494 TIGRFAM dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 265 485 IPR004489 GO:0006099|GO:0016491
Lele16g1286 494 CDD fer2 292 326 IPR001041 GO:0051536
Lele16g1286 494 FunFam Succinate dehydrogenase iron-sulfur subunit SdhB 361 492 - -
Lele16g1286 494 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 394 424 IPR017896 -
Lele16g1286 494 Gene3D - 251 360 IPR012675 -
Lele16g1286 494 Pfam Plastocyanin-like domain 41 116 IPR003245 GO:0009055
Lele16g1286 494 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 404 415 IPR017900 -
Lele16g1286 494 FunFam Early nodulin-like protein 1 21 127 - -
Lele16g1286 494 SUPERFAMILY alpha-helical ferredoxin 361 487 - -
Lele16g1286 494 Pfam 2Fe-2S iron-sulfur cluster binding domain 262 365 IPR025192 GO:0009055|GO:0051536
Lele16g1286 494 Gene3D - 361 492 IPR009051 GO:0051536
Lele16g1286 494 PANTHER SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN 251 489 - -
Lele16g1286 494 SUPERFAMILY 2Fe-2S ferredoxin-like 260 360 IPR036010 GO:0051536
Lele16g1286 494 SUPERFAMILY Cupredoxins 22 123 IPR008972 -
Lele16g1286 494 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 313 321 IPR006058 GO:0051537
Lele16g1286 494 FunFam Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial 251 360 - -
Lele16g1286 494 Pfam 4Fe-4S dicluster domain 403 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1286 Lele-ChrLele16 7293438 7296160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1286 7 126 Phytocyanin Superfamily AT1G48940 53.719 1.67e-43 150