Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1266 ATGACGGTATTTTCCGGCAAGCAGGTGTTTCCGGTGGACTACGAGGCCGAGGTGTCGCAGCGCCTCCTCGAAGCTTGTCACTACGGGGATCAGAACTTGGCCTTAGAGTGCATTGCCGATCCATTCGTGGACGTCAACTTCGTCGGCGCAGTGAGCTTGAAGATGAGAAAGGCCGAGCTGGTTCTACACGAGGAATCGGCTAGCGAAGTTCGCGTTGAGTTCGAAGAGTTCAAGACCGACGTCACTGCTTTGTTTCTTGCTGTTCATACGGGGAATGAGAGCCTCGTGAAGAAGCTGCTGAGTATGGGAGCTGATGTAAACCAGAAACTCTTCAGAGGCTTTGCAACAACTGCAGCAGCGAGGGAGGGCCACATTGATATTCTTGAGATCTTGCTTAAAGTTGGGGCATCACAGCCAGCATGTGAAGAAGCTCTTTTAGAGTCAAGCTGCCACGGGCAAGCCAAGTCTGCTGAATTGCTCATGAGCTCTGATTTAATCCGACCCCACGTAGCTGTACATGCTCTTGTGACAGCATGCTGCAGGGGGTTTGTAAATGTGGTAGATACTCTCATAAAGTGTGGCGTGGATGTAAGCGCAGAAGATCGGGTACTTTTGCATTCAGTTAAGCCTGCTCTCCACACAAATGTTGATTGTACTGCACTTGTTGCTGCTGTAATTCATAGGCAGGTCTCAGTCGTTGCTTTGCTACTGCAGAATGGTGCTAGGATAGACACCAAAGTGAGGCTAGGAGCATGGTCATGGGATGTCATAACGGGTGAAGAAATTCGTGTGGGTGCTGGACTGGGAGAAACTTTTGTCGTAACCTGGTGTGCAATTGAATATTTTGAAAAAAGTGGAGCTATACTTAACATGCTCCTGCAGAATGTTTTCCTCAACAACCCTCACTGTGGAAGAACCCTTCTACACCATGCCATTCTTTGTGGCAATGTTGAGGGTGTGAGGATACTCTTAGAATGTGGTGCTGATGTTGAATCCCCAGTTAAAACAACTCAGAAGACTGAATTCCGTCCATTACACATGTCTTCTCGTCTTGGCTTTTCAACAATCGTTCAATGCCTTATTGCTTTTGGTTGTGATTTGAACTCTATTACAGACGCTGGTGACACAGCTTTGATGATCTGTGCAAAATATAAACAAGAAAAGTGTCTCAAAGTACTCACAATGGCCGGTGCCGATTTTGGCTTAGTCAATACTGCTGGTCATTGTGCAAGTTCAATTGCTGAGTCAAACCAGTGGTCACTTGGTTTTCAGCAGGCATTACTGGATACAATCAGAAAAGGAAAGATACCCACATCTAGCAATATCTCTGTGCTTTCACCCCTTTTATTTGCAGCTGAAGCTGGGGATACGGAGGCATTGAAAACTGTAATTACTTATGGAGGATTCGATCTTGACTATCAAGATGATAATGGCTTCTCTGCTGTTATGGTTTCTGCCTTGAAGGGTCACGTAGAAGCGTTTCAGTTGCTTGTATATGCTGGAGCCGATGTAAATCTATGCAATAAATATGGTGAAACAGCAATTGCCCTATCTGAGTTGAACCATAATCACGATTTATTCGAAAAGGTCATGCTTGAATTTGCACTTGAAAAGGGCAATCACAATGCTGGCTTCCACGCTTTACACTGTGCAGCTCGTCGTGGCGACTCGGATGCTGTGAAATTGCTCACTGATAAGGGTTATGACGTGAATGTTCTTGATCAGGAAGGCTACACTCCACTCATGTTAGCAGCAAGAGAAGGCCACGGTTCCATTTGTGAGCTCTTAATTTCACACGGAGCTCGTTGTAATACTAAGAATGCTAGGGGCGAAACTGCACTTTCACTTGCAAGAAAATTTACTGGAGGTGATAAGAACGACGCAGAGGCTATCATACTCGACGAGCTTGCTCGTAAATTGGTACTAGGTGGCACGTACGTGCAAAAGTATACCAAAGGAGGGAAGGGTTCTGCTCATGGCAAAAAGATACAAATGTTGGGATCTGTAGGAGTGTTCTCTTGGGGTAAGTCAAGCCGGAGAAATGTGATATGCCGTGAGGCAGAGTTGGGACCAAGTTTGTCTTTTCGTAGAAATAGGAACACAAGAGGTGATGCTGACGATCCAGGAATATTTAGGGTGGTCACTATCAAGAACAAGGAAGTGCATTTTTTGTGTGATGGGGGGTTTGAAACTGCTGAGCTTTGGGTGAGGGGCATAAAACTTGTGACCAGAGAAGCTAAGTTTGGTAAGCGCATAGCATTGATGTGA 2268 0.4577 MTVFSGKQVFPVDYEAEVSQRLLEACHYGDQNLALECIADPFVDVNFVGAVSLKMRKAELVLHEESASEVRVEFEEFKTDVTALFLAVHTGNESLVKKLLSMGADVNQKLFRGFATTAAAREGHIDILEILLKVGASQPACEEALLESSCHGQAKSAELLMSSDLIRPHVAVHALVTACCRGFVNVVDTLIKCGVDVSAEDRVLLHSVKPALHTNVDCTALVAAVIHRQVSVVALLLQNGARIDTKVRLGAWSWDVITGEEIRVGAGLGETFVVTWCAIEYFEKSGAILNMLLQNVFLNNPHCGRTLLHHAILCGNVEGVRILLECGADVESPVKTTQKTEFRPLHMSSRLGFSTIVQCLIAFGCDLNSITDAGDTALMICAKYKQEKCLKVLTMAGADFGLVNTAGHCASSIAESNQWSLGFQQALLDTIRKGKIPTSSNISVLSPLLFAAEAGDTEALKTVITYGGFDLDYQDDNGFSAVMVSALKGHVEAFQLLVYAGADVNLCNKYGETAIALSELNHNHDLFEKVMLEFALEKGNHNAGFHALHCAARRGDSDAVKLLTDKGYDVNVLDQEGYTPLMLAAREGHGSICELLISHGARCNTKNARGETALSLARKFTGGDKNDAEAIILDELARKLVLGGTYVQKYTKGGKGSAHGKKIQMLGSVGVFSWGKSSRRNVICREAELGPSLSFRRNRNTRGDADDPGIFRVVTIKNKEVHFLCDGGFETAELWVRGIKLVTREAKFGKRIALM 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1266 755 SMART ANK_2a 373 402 IPR002110 GO:0005515
Lele16g1266 755 SMART ANK_2a 110 140 IPR002110 GO:0005515
Lele16g1266 755 SMART ANK_2a 443 473 IPR002110 GO:0005515
Lele16g1266 755 SMART ANK_2a 216 245 IPR002110 GO:0005515
Lele16g1266 755 SMART ANK_2a 477 506 IPR002110 GO:0005515
Lele16g1266 755 SMART ANK_2a 576 605 IPR002110 GO:0005515
Lele16g1266 755 SMART ANK_2a 543 572 IPR002110 GO:0005515
Lele16g1266 755 SMART ANK_2a 170 199 IPR002110 GO:0005515
Lele16g1266 755 SMART ANK_2a 303 332 IPR002110 GO:0005515
Lele16g1266 755 SMART ANK_2a 340 369 IPR002110 GO:0005515
Lele16g1266 755 SMART ANK_2a 79 108 IPR002110 GO:0005515
Lele16g1266 755 SUPERFAMILY Ankyrin repeat 22 248 IPR036770 -
Lele16g1266 755 Gene3D - 335 423 IPR036770 -
Lele16g1266 755 Gene3D - 531 622 IPR036770 -
Lele16g1266 755 Gene3D - 164 262 IPR036770 -
Lele16g1266 755 ProSiteProfiles Ankyrin repeat profile. 303 335 IPR002110 GO:0005515
Lele16g1266 755 SUPERFAMILY Ankyrin repeat 302 618 IPR036770 -
Lele16g1266 755 ProSiteProfiles Ankyrin repeat profile. 543 575 IPR002110 GO:0005515
Lele16g1266 755 ProSiteProfiles Ankyrin repeat region circular profile. 543 574 - -
Lele16g1266 755 Pfam Ankyrin repeats (3 copies) 445 506 IPR002110 GO:0005515
Lele16g1266 755 ProSiteProfiles Ankyrin repeat region circular profile. 576 607 - -
Lele16g1266 755 PANTHER ANKYRIN REPEAT-CONTAINING 16 728 - -
Lele16g1266 755 ProSiteProfiles Ankyrin repeat region circular profile. 79 107 - -
Lele16g1266 755 ProSiteProfiles Ankyrin repeat profile. 576 608 IPR002110 GO:0005515
Lele16g1266 755 ProSiteProfiles Ankyrin repeat profile. 477 509 IPR002110 GO:0005515
Lele16g1266 755 Gene3D - 424 530 IPR036770 -
Lele16g1266 755 Gene3D - 269 334 IPR036770 -
Lele16g1266 755 ProSiteProfiles Ankyrin repeat region circular profile. 477 509 - -
Lele16g1266 755 Gene3D - 11 163 IPR036770 -
Lele16g1266 755 Pfam Ankyrin repeats (many copies) 569 617 IPR002110 GO:0005515
Lele16g1266 755 Pfam Ankyrin repeat 303 330 IPR002110 GO:0005515
Lele16g1266 755 Pfam Ankyrin repeat 82 108 IPR002110 GO:0005515
Lele16g1266 755 ProSiteProfiles Ankyrin repeat region circular profile. 303 331 - -
Lele16g1266 755 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1266 Lele-ChrLele16 7176567 7180508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1266 448 617 Ion Channels AT2G25600 27.586 1.92e-06 49.7