Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1256 ATGGGGGATAACTCCAGTACTATTGAAGAGACAGTAATGAATCACACCCCTGAAGGGGAAGCTGAAGGAGAAGAGAGAGACCCAGAAAGCAATCCCCTGAATGAGCCACTGCTCAAGAGGAATCGAACACTTTCCACCAATCCTCTTGCTCTCGTCGGAGCCAAAGTTTCCTACATAGAAAGCTTGGACTACGAGATAAATGAGAATGATCTGTTCAAGCATGATTGGAGGAGCAGATCGAGAGTTCAAGTTTTGCAGTACATATTCTGTAAATGGTCGCTGGCTTTCCTTGTTGGACTTCTTACAGGACTTGTGGCCACCCTCATCAATCTTGCAATTGAGAACATTGCCGGTTACAAGATTCTCGCTGTCGTCGGATTCATCGAGAATGACAGGTATTTAGCGGGCTTCTTATATTTCACCGGCACGAATTTCTTACTAACATTCGTCGCTGCTCTTCTGTGTGTGTGTTTTGCACCCACAGCAGCGGGACCTGGTATCCCTGAAATCAAAGCTTATCTTAATGGCGTCGATACTCCCGACATGTATGGTGCCAAGCCATTGATCGTCAAGATAATTGGAAGCATTGGAGCTGTAGCTGCAGGGCTAGATTTAGGAAAAGAAGGACCATTGGTACATATTGGAGCCTGCATAGCTTCCTTACTAGGCCAAGGAGGCACTGAGAAACACCGGATCAAATGGAGATGGCTTCGATATTTCAACAACGATCGAGACCGGCGAGATCTCATCACATCATTCAGGGCACCTGTTGGAGGAGTTCTGTTTTCTCTAGAGGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTGTGGAGAACCTTTTTCAGCACAGCCGTGGTGGCGGTGGTGCTCAGGGCCTTCATTGAAGTCTGCAATTCTGGGAAATGTGGCCTCTTTGGCACAGGAGGGTTGGTCATGTTTGATGTCAGCAGTGTCACAGTGAGATACCATGTAATGGATATCATCCCTGTTGTTATCATCGGGATCATTGGTGGGGTATTGGGAAGCCTCTATAACCATCTTCTTCACAAGGTCCTCAGAGTCTACAGTCTCATCAATCAGAAGGGGAAAATGCACAAGCTCCTACTCAGTCTCTCAGTTTCACTCTTCACATCAGTGTGCCAATATTGTCTTCCATTCTTTGCAAGATGCATCCCCTGTGATCCGTCGCTTCCAGAAAATGCCTGCCCCACGAATGGGCGGTCTGGAAATTTTAAACAGTTCAATTGCCCCAGTGGTCACTACAATGAACTGGCTACTTTATTGCTTACCACTAATGATGATGCTGTTAGAAACATATTCTCAACGAACACTTCACATGAGTATCATCCATCTTCCCTCCTAATTTTCTTTGCACTCTATTGCATATTAGGGCTCATTACTTTTGGGATTGCTGTTCCATCTGGGCTCTTCCTGCCAATAATCCTCATGGGTTCTGGTTATGGGCGTCTTCTTGGCCTCTTGATGGGACCTCACACAAAAATTGACCAGGGGTTGTTCGCTGTTCTGGGTGCAGCCTCTCTCATGGCTGGTTCAATGAGAATGACAGTATCAGTCTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTGCTACTTCCCATTACAATGATTGTTCTCCTGATAGCCAAGACAGTTGGGGACAGTTTTAACCCTAGCATCTATGAAATTATACTGCACTTGAAAGGGCTTCCTTTCTTGGACGCAAATCCTGAGCCATGGATGAGAAATCTCACAGTGGGTGAACTTGTTGATGTAAAACCACCGGTGATTACCCTCAATGGAGTAGAGAAGGTGGCTCGTATAGTGGAAGTTCTTAAAAACACTACACATAATGGTTTCGCAGTTGTGGATGAACCGGAGGAAGCTTCAAGGGGAGCGGCCAAGCTTCATGGACTGATCCTAAGAGCACACCTTGTGTTAGCGCTAAAGAAGAAATGGTTAACGAAGGAAAGAAGGAGGACAGAGCAATGGGAAGTGAGAGAGAAATTTACATGGGTGGACCTGGCAGACCGAGAAGTGAATATTGAGGAAGTGGCAGTGACGAGGGAGGAAATGGACTTGTTCGTCGATCTACATCCTTTCACCAATACGACTCCTTTTACAGTTCTGGAGAGCATATCGGTGGCAAAAGCGATGGTCCTCTTCAGACAACTAGCACTTCGACATATGCTTGTTTTGCCCAATTATCAACCATCTGGGGCAGGATCTATTAGCCCACAACATTCTTACAGTCTTTCCTCACCTGAAGAAAATATGAGCGCAGAGAAAAAAGGAAATAAACCTTCCCAAATAATTGTACGGCCAAGCAGTTTCTTAGAACAAGTCTCCATTTTCATTCCTGTGAGAGTTCCTCACTCCCTCCTCAGTTTTGTATTACGTGGATCAAAGTACAGGGATGGATCAGATACAAGGCGGTGTATACCTATATTCAATTGA 2457 0.4571 MGDNSSTIEETVMNHTPEGEAEGEERDPESNPLNEPLLKRNRTLSTNPLALVGAKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFCKWSLAFLVGLLTGLVATLINLAIENIAGYKILAVVGFIENDRYLAGFLYFTGTNFLLTFVAALLCVCFAPTAAGPGIPEIKAYLNGVDTPDMYGAKPLIVKIIGSIGAVAAGLDLGKEGPLVHIGACIASLLGQGGTEKHRIKWRWLRYFNNDRDRRDLITSFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVAVVLRAFIEVCNSGKCGLFGTGGLVMFDVSSVTVRYHVMDIIPVVIIGIIGGVLGSLYNHLLHKVLRVYSLINQKGKMHKLLLSLSVSLFTSVCQYCLPFFARCIPCDPSLPENACPTNGRSGNFKQFNCPSGHYNELATLLLTTNDDAVRNIFSTNTSHEYHPSSLLIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGLLMGPHTKIDQGLFAVLGAASLMAGSMRMTVSVCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNLTVGELVDVKPPVITLNGVEKVARIVEVLKNTTHNGFAVVDEPEEASRGAAKLHGLILRAHLVLALKKKWLTKERRRTEQWEVREKFTWVDLADREVNIEEVAVTREEMDLFVDLHPFTNTTPFTVLESISVAKAMVLFRQLALRHMLVLPNYQPSGAGSISPQHSYSLSSPEENMSAEKKGNKPSQIIVRPSSFLEQVSIFIPVRVPHSLLSFVLRGSKYRDGSDTRRCIPIFN 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1256 818 FunFam Chloride channel ClC3 83 390 - -
Lele16g1256 818 MobiDBLite consensus disorder prediction 15 33 - -
Lele16g1256 818 PRINTS Chloride channel signature 504 520 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g1256 818 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g1256 818 PRINTS Chloride channel signature 472 492 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g1256 818 PRINTS Chloride channel signature 560 574 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g1256 818 PRINTS Chloride channel signature 246 265 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g1256 818 PRINTS Chloride channel signature 522 541 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g1256 818 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g1256 818 Gene3D - 592 735 IPR046342 -
Lele16g1256 818 SUPERFAMILY Clc chloride channel 69 575 IPR014743 -
Lele16g1256 818 Pfam Voltage gated chloride channel 148 553 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g1256 818 MobiDBLite consensus disorder prediction 1 37 - -
Lele16g1256 818 MobiDBLite consensus disorder prediction 744 767 - -
Lele16g1256 818 CDD CBS_pair_voltage-gated_CLC_euk_bac 593 735 - -
Lele16g1256 818 MobiDBLite consensus disorder prediction 744 759 - -
Lele16g1256 818 PRINTS Plant CLC chloride channel signature 267 275 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele16g1256 818 PRINTS Plant CLC chloride channel signature 281 291 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele16g1256 818 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele16g1256 818 PRINTS Plant CLC chloride channel signature 299 306 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele16g1256 818 PRINTS Plant CLC chloride channel signature 424 440 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele16g1256 818 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 25 742 - -
Lele16g1256 818 CDD ClC_6_like 60 573 - -
Lele16g1256 818 Gene3D Clc chloride channel 83 575 - -
Lele16g1256 818 SUPERFAMILY CBS-domain pair 577 737 IPR046342 -
Lele16g1256 818 SMART cbs_1 595 650 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1256 Lele-ChrLele16 7107903 7112034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1256 8 740 Ion Channels AT3G27170 74.933 0.0 1140