Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1253 ATGACTAAATCTGAATCAATGAGGGCTGTACCTTTTCAGAAAGTCGTCGACAAAGGTCTTGGCGATCTGGCCATAGAAGATCCAAAGACTGACTTCTACAGTCAGTCTATAACTGACGAAAGAAAGGGCGAGGCAGTGGCCGTGGGTTCGAGCTCGGAAACAGAGTCGGCCTTCCGGGAGGTCGATGGTGGCGGTGCCTTAGGCCGCGAAAATGGTACTTCATCTTGCACCCTAATCCCACTTTCTTTGCACTTTCGTCTTTTAGACTTGGCTGCATTTTTCATTCTTTTGATTCAATTTTTTTTGTTGCAGGTGAAATACTCGAGAGAGCCTGACAATCCCACCAAGTCATGCAAAGCCCGAGGTTCAGATCTCAGAGTTCATTTTAAGAACACAAGGGAGACAGCCTTCGCAATCAGGAAGTTGCCCTTGGGAAAGGCTAAAAGGTATCTGGAAGATGTTATTGCTCACAAACAAGCAATTCCCTTTCGACGTTATTGTGGTGGAGTTGGCCGCACGGCTCAAGCCAAAAATCGTCATTCAAATGGCCAAGGGCGCTGGCCTGCCAAATCCGCAAAGTTTGTCCTTGATCTGTTGAAAAATGCTGAAAGTAATGCCGAAGTGAAAGGTCTTGATGTAGATGCACTATACGTTTCCCACATTCAGGTTAATCAAGCTCAGAAGCAGAGGCGCCGTACCTACCGTGCTCATGGGAGAATTAACCCATACATGTCATCACCCTGCCACATTGAACTGATTTTGTCTGAAAAGGAGGAGCCAGTCAAAAAGGAGCCCGAGACCCAGCTGGCTCCCAGAACAAAGAGCTCGTAG 831 0.4741 MTKSESMRAVPFQKVVDKGLGDLAIEDPKTDFYSQSITDERKGEAVAVGSSSETESAFREVDGGGALGRENGTSSCTLIPLSLHFRLLDLAAFFILLIQFFLLQVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKNRHSNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAPRTKSS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1253 276 CDD Ribosomal_L22 118 254 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lele16g1253 276 TIGRFAM uL22_arch_euk: ribosomal protein uL22 107 257 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele16g1253 276 PANTHER 60S RIBOSOMAL PROTEIN L17 105 275 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele16g1253 276 ProSitePatterns Ribosomal protein L22 signature. 230 254 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lele16g1253 276 Gene3D Ribosomal protein L22/L17 104 276 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lele16g1253 276 Pfam Ribosomal protein L22p/L17e 120 255 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lele16g1253 276 MobiDBLite consensus disorder prediction 256 276 - -
Lele16g1253 276 Hamap 50S ribosomal protein L22 [rplV]. 103 257 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele16g1253 276 SUPERFAMILY Ribosomal protein L22 105 257 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lele16g1253 276 FunFam 60S ribosomal protein L17 104 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1253 Lele-ChrLele16 7086858 7090791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1253 105 274 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.588 2.17e-115 327