Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1238 ATGGAGTGGTCAGTGTGGGATCCACTAAGAGATCAGCCGAACGTTGGAGAAGCTCCGGTGGAGAAAACAGTGTCAGCTGCGGAGACAGAGATGTCGAGCTCAAAATTATCATCAAACAGGAAGCGCGTGTACCAGAAATCGCCGGAGAAGGTGAAGTGCTCGGTGGATGGATGCGAGTTTGACCTGGGGAATTGCCGGGAGTATCACCGGCGGCACAGGGTGTGTCAACCTCACTCCAAGACCTCTTGTGTGTTGGTGAAGGGACAGGAACAGAGATTCTGCCAGCAATGCAGCAGAAGGAAACCTCGTCCTCCACCTCTCGCCTTCTCTGCAGATTACTATAACATAGGACCCAGAATCCTGCAATTTGGGAATCCTAGGAGTGATGATCCTTACACGAGTATGTGGAGCGCTCAACTTTCTCGGAGCTATAATCGTTTCCCACCAATTTTGCAGAAGATTGAGATTGAGCAACAGAGTGTGGAAGGTCGTGCCTTTGCCAGCAACATAGAGAATATGCAGGTGAATTGGCATAATAATGAACGAGTTCCGCCATTAACAGCGGAAGCAGCAGCTGGAATCGGAGATAAGAACCAGAAGATGGCTTCGGAATCTGCTCTCTATCTTCTGTCAGCACTTCAGGCACAGAGTTCGTCAGAGTTCAGTATGGTAGAGTCAAGTATAGAGTGTCCAATTCAATCGCAAGCTCCATTTGAAGACGACGATGGAACCCCAAGCTGTTCCAGATTGGGTGAGGATCCTAAAGAAACAAACTTTGATCAGAATGGGATGCTTCAAGCGGAGCCCCAGTTGATGGAATACGGTGGGGGATCCCTCAAGTTCCCTTTTTTCTGGGAGTAA 861 0.4913 MEWSVWDPLRDQPNVGEAPVEKTVSAAETEMSSSKLSSNRKRVYQKSPEKVKCSVDGCEFDLGNCREYHRRHRVCQPHSKTSCVLVKGQEQRFCQQCSRRKPRPPPLAFSADYYNIGPRILQFGNPRSDDPYTSMWSAQLSRSYNRFPPILQKIEIEQQSVEGRAFASNIENMQVNWHNNERVPPLTAEAAAGIGDKNQKMASESALYLLSALQAQSSSEFSMVESSIECPIQSQAPFEDDDGTPSCSRLGEDPKETNFDQNGMLQAEPQLMEYGGGSLKFPFFWE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1238 286 MobiDBLite consensus disorder prediction 26 41 - -
Lele16g1238 286 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 99 IPR044817 GO:0003677
Lele16g1238 286 Pfam SBP domain 53 100 IPR004333 GO:0003677
Lele16g1238 286 ProSiteProfiles Zinc finger SBP-type profile. 50 130 IPR004333 GO:0003677
Lele16g1238 286 SUPERFAMILY SBT domain 51 99 IPR036893 GO:0003677|GO:0005634
Lele16g1238 286 MobiDBLite consensus disorder prediction 1 43 - -
Lele16g1238 286 MobiDBLite consensus disorder prediction 234 265 - -
Lele16g1238 286 Gene3D - 48 149 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1238 Lele-ChrLele16 7027099 7028121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1238 30 126 SBP-box Gene Family AT3G57920 37.705 1.52e-18 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele16g1238 SBP 4.8e-15 No_clan