LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g1237	ATGGAGAATTATGCCCTGTTGTTCCCTGGTCCTACTTCTTCTTCTTCAAGCTATCAAGTGCCGAGGAGTGCCATGGGAGCCTCTTATCATCATGGATTTAGTAGCTTTGATGGCCAAATCTCGAATGGGTTTCTGGGTTTGAGGCCCAGTGATCATCAAAGCAATGATTTGCAGAAAATTAGAGGAGAAGTAGTTAGAGATGGGCCGTTATCTCAGAGCGGAAATGAGAAGGATGATCATGATCAGATAGGTGGTGATGGTGGTCGTGGTGGTGGTACGGGGAAAAAGAAAGGAGAAAAGAAGGTTAGAAAGCCTAGATTTGCTTTCCAAACTCGGAGCCAGGTTGACATTCTTGATGATGGCTACAGATGGAGAAAATATGGCCAGAAAGCTGTTAAAAACAACAAATTCCCCAGGAGCTACTACAGATGTACTCATCAAGGGTGCAATGTGAAGAAGCAAGTTCAACGTCTAACGAAAGACGAAGGGGTAGTGGTGACCACATATGAAGGAGTTCACACACACCCAATTGAGAAGACAACGGACAACTTCGAGCACATTTTAAGTCAGATGCATATATACACTCCCTTTTAA	594	0.4394	MENYALLFPGPTSSSSSYQVPRSAMGASYHHGFSSFDGQISNGFLGLRPSDHQSNDLQKIRGEVVRDGPLSQSGNEKDDHDQIGGDGGRGGGTGKKKGEKKVRKPRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMHIYTPF	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g1237	197	Gene3D	WRKY domain	95	177	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele16g1237	197	SMART	WRKY_cls	118	177	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele16g1237	197	MobiDBLite	consensus disorder prediction	67	104	-	-
	Lele16g1237	197	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	39	180	IPR044810	GO:0003700
	Lele16g1237	197	SUPERFAMILY	WRKY DNA-binding domain	110	177	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele16g1237	197	ProSiteProfiles	WRKY domain profile.	113	178	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele16g1237	197	Pfam	WRKY DNA -binding domain	119	176	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele16g1237	197	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele16g1237	197	FunFam	WRKY transcription factor 57	104	178	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g1237	Lele-ChrLele16	7021387	7023032	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g1237	106	197	WRKY Transcription Factor Family	AT5G13080	85.870	3.08e-57	175

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele16g1237		WRKY	1.9e-26	CL0274