Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1201 ATGGAGAGACATATGCTACCAAGAGCTTCTGGCGTCCCCTGGATAGAAGAAGTTGAAGATGCAGCATCTTGGACCAGAATTAACAACGAAGGTGAGTCCAAGGACCAGGGCATTGCCTTGGGAGGTCCTCTAACGTCCTTCCAATCCATGCTCGAAGGTGAATGGTACATGGATTCTGCTATCAATTCATCTCATCAAGATCTCCCTGGTCTTCCAGTTCACCAAGAAACCAGAGATATTGGTTTTTGTTCGAATCCAAATGATAATTTCCTGTTGCAGCCTATAGATTCATCTTGTTCACCTTCATTCGCTATCGACCCGGCGCAGTCACAGCCATTTTTACCACCCAAATCGTGCTTCCCTTCTCTCTTCAACGCTGTTTGTAACAACCCTTTTGAGAACAATGGCTTCGATTTGGGCTCTGAAAGTGGGTTTCTCGGTCACTTCCAGGGAAATCAGCCTTCGAGTTCTCATGTTCTGATGGGATTTTCCGGCTTGAATACTCAACCACAGATGGGCAACCTCGAGCTTGGTTCTAGCGCTGAATTCCCAGCAACTCGTCTATTGCCTGCTGCTGACAATGGCGTCACACTTGGTGGCGGATTTAGTCCAATGGGTTTAGAAGGATACGATGGTTCCGGAAATGCTCTGTTTTCTAACAAGGCTAAGGTTTTAAGACCACTTGATGTTTTCCCTCCAGTTGGTGCTCAACCCACTCTCTTCCAGAAGCGAGCTGCGCTTCGCCAAATCTCGGGCGGACCTGATAAATTGGGAGCTTTAGAGATTTCGCCGTCTGGATTTAACGATTGTTCAAACATGGAGAAGAAGAGGAAGTTAGAAGACGGCGAAATCGAAGAAGCAAGTATCGATGCGTCTGGAGGGAATTATGATTCTGATGATCTTAATGAGAATGATAAGGCAGAGGAGAATGGGAATAACGGCGGAAGCAATTCTAATGCAAACAGTACTGTTACATGTGGAGATCAGAAGGGGAAGAAGAAGGGATTACCTGCGAAAAATCTCATGGCCGAGAGAAGGCGCAGGAAGAAACTAAATGATAGGCTATACATGCTTCGGTCAGTTGTGCCGAAGATTAGTAAGATGGATAGGGCTTCCATACTTGGGGATGCAATTGACTACTTGAAGGAGCTGCTTCAGCGGATCAACGATCTTCATAATGAACTGGAGTCAAACCCACCTGGTTCACTGCCACCACCTTCTACAAATTTCCACCCTTTGACGCCCACTCTCCCAACCCTTCCCTGCAGGGTCAAGGAAGAACTTTGCCCTACCTCTTTGCCGAGCCCTAGGAACCAACCTTCGCGAGTGGAGGTTAGGTTAAGGGAAGGGAGAGCTGTGAACATCCATATGTTTTGTGCCCGCAGACCAGGTCTTCTTCTTACCACCCTGAAGGCTTTGGACAGCCTTGGATTGGACATTCAGCAGGCTGTTATCAGTTGTTTCAATGGCTTTGCTTTAGATGTGTTCCGAGCTGAGCAATGCAGAGAAGGCCAGGATGTTGCCCCTGAGCAAATTAAAGCAGTATTGTTGGATTCAGCGGCTTGCCATGGAATGGTGTGA 1581 0.4738 MERHMLPRASGVPWIEEVEDAASWTRINNEGESKDQGIALGGPLTSFQSMLEGEWYMDSAINSSHQDLPGLPVHQETRDIGFCSNPNDNFLLQPIDSSCSPSFAIDPAQSQPFLPPKSCFPSLFNAVCNNPFENNGFDLGSESGFLGHFQGNQPSSSHVLMGFSGLNTQPQMGNLELGSSAEFPATRLLPAADNGVTLGGGFSPMGLEGYDGSGNALFSNKAKVLRPLDVFPPVGAQPTLFQKRAALRQISGGPDKLGALEISPSGFNDCSNMEKKRKLEDGEIEEASIDASGGNYDSDDLNENDKAEENGNNGGSNSNANSTVTCGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESNPPGSLPPPSTNFHPLTPTLPTLPCRVKEELCPTSLPSPRNQPSRVEVRLREGRAVNIHMFCARRPGLLLTTLKALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVAPEQIKAVLLDSAACHGMV 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1201 526 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 404 IPR036638 GO:0046983
Lele16g1201 526 SMART finulus 341 390 IPR011598 GO:0046983
Lele16g1201 526 MobiDBLite consensus disorder prediction 308 328 - -
Lele16g1201 526 CDD ACT_UUR-ACR-like 455 515 - -
Lele16g1201 526 FunFam BHLH transcription factor 331 399 - -
Lele16g1201 526 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Lele16g1201 526 Coils Coil 378 398 - -
Lele16g1201 526 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 209 521 - -
Lele16g1201 526 CDD bHLH_AtAMS_like 338 405 - -
Lele16g1201 526 MobiDBLite consensus disorder prediction 271 285 - -
Lele16g1201 526 Gene3D - 329 398 IPR036638 GO:0046983
Lele16g1201 526 Pfam Helix-loop-helix DNA-binding domain 342 384 IPR011598 GO:0046983
Lele16g1201 526 MobiDBLite consensus disorder prediction 254 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1201 Lele-ChrLele16 6753633 6756869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1201 23 499 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.510 5.51e-149 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele16g1201 HLH 2.2e-09 No_clan