Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1194 ATGTCCATCTTGCCCTCACAAGCTTCAACCTCATCGTCTTCTCAATCTCCGATATCTCCAAACCCTAATCCCCAACATGGAAACCTCTCTCACTGGTCTCATTCTCCTCCATCCGTCTCCTCTCCTCTACTTCAAGTTCCATCCTTCGGATCTCTCCGGATCTCCAATTCACCATCTCCCGTCGCTATGCCCGACGTCGATTCAGGCCCATCGACTCCAGGTACAGAAGATTCTGGTGGACCTTCCGAAAAGGTGACTGTGTTGGGATCTCCAAGTGGTATGCAGAGTTCACCTCACCAAAACTCTAGAGTACAATCCCAAGGTCAGTCAAGAAGACGGGCAACTAGATCATCCCAGTCAGCAGGGAGGATGACAGGAACAGTTTCTTCTCCTGGAGATCAGCAAAGTACTAGGTCTTTAAATCCTCATGGGAGCACCCCTTCAGTGGGACGAAAATCTCAGATGGTTAATGGTAATCACTTGCTGAACTTTCATTATGATCCCATATCCTGTCCTCAAGCAAGGGGTCCTCCTCCTCCACCACCAAGAAGGCAGAAGAAGAAAAGGCCATACAACAAAGATTTATTTTTACAAGCAAATTACAAATTCGTGGTGTTGGATTCAGGAGACTATTCGGCAGAGTCTTTGGACCCGGACAAAATGCTACAGTGGGAAGATATTGTGTGTTTGTGGTATTCCACTCCATTCTTGGTTCAGTGTCCAATTTGTTTGGAGTATCCTCTTTGTCCACAAATAACCTCTTGTGGACATATTTTTTGTTTCCCTTGTATCTTACAATATTTGATGATGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCCTTATGTTTTGTCATGATATCTGCAAAGGATTTATATACTATCTACATTGAAAATGTTGAGCAGTATCAAGTGGGAGATACTATCGAGTTCAGACTTTTAACTCGGAAAAAGGAATCTTGTACTCTGTCTCATAAAAATAAGGAGACGGATGTCTTATCATGTGGTGGTAACAATTTATGTGACCCATTTTCAAAGTTCACACTCACATCAGATGTAGATCTCTCAGTTAGACAGGCAATATCAGATCTAGATGGTTGGCTAGCTAAAGCTGATTCGGGTCTTGTTGATGACTTGGAGAAACTTCCATATGTTTGTGCTGCGATGCAACAATTGGAACAGAGGAAGAAGTATTGGAATGAGCACAGGGCTTGTGATGTTGGAAAATCCTCTAGGCTTATTGATTGTGGACATCGCAAACCAGCAACAGTTGTAAATGGCACTGATGTTGATGATGAAACCCGGTCTTATGGATGGGGACCTTCCTCTACAGATTCCCACGATCAAAGCAAGGGTATAATAATGGATAATTCAAATGTAAGAGTCTGTCCAGATCAAACTTCGGATGTGGAGAGGAAAGTATTAGATCAAGAAATTAATCCATCTTCTTCCTATGAGGAGAAAACTGATATTCAAAGGCATCCAAATGGTTTTGGAGATTCAAATGAGAGTGACTCGTACAATTTTTACCAGGCTGCAGATGGTCAGCATCTCATGCTGCATCCCCTAAACATGAAGTGTCTACTTCACCATTATGGAAGCTATGATATGCTTCCACACAGAATGAGTGGAAGGATTCTGCAATTGGAGACAGTCACTCAGTCACAGGCAATGAGGAGGCGGTACAGATATTTGAGTCATTTTCCTTTGACGGCGACATTTCAGCTTTGTGAAATTGATATGAGTGAGATGCTGCCCTCTGAATCCCTGGCCCCATTCATGGATGAATTGAAGAAGCGTGCAAACCAGAGGAGGCAACTTGCAAAGAAGGAACGAAAAGAGAAAATCAAGGCTGAAGCTGCTTTTGCGCATTCTGTTCCCATACCAACCAGTTCTCAGCTGATGTTTTGTGACGATTTTCCGCCGTTCTCCATGGATGATTTTGAAGCTCTGGGGAATTCGACTGTATCATCAAGTCCTCCTGTTGTTGGGGGGAGAAGTTTGTTTTCAAATGTTGCAAGACTTGGTTTTGCTGCTGGTCATGATTCTCCATCCTTGAACATTCAAGAAACTAATGGTCTACACAATCATAATACGACAACTGATTCTTCTGGCTTGACAGGTCTGAGAAATGTGGAGGCATCATCATTTGCCAATGTTATATCTAGAGCAGAGTCTCTTAATAGCTTAAATGCACCCAAGACAAGTGACTTGGGAAAGAAGGGGAAGAAACCAACTAGAGTTCTTCTGTCAACAGCCGGGGGTAGGCGTTACTGA 2286 0.4326 MSILPSQASTSSSSQSPISPNPNPQHGNLSHWSHSPPSVSSPLLQVPSFGSLRISNSPSPVAMPDVDSGPSTPGTEDSGGPSEKVTVLGSPSGMQSSPHQNSRVQSQGQSRRRATRSSQSAGRMTGTVSSPGDQQSTRSLNPHGSTPSVGRKSQMVNGNHLLNFHYDPISCPQARGPPPPPPRRQKKKRPYNKDLFLQANYKFVVLDSGDYSAESLDPDKMLQWEDIVCLWYSTPFLVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDCWKRCPLCFVMISAKDLYTIYIENVEQYQVGDTIEFRLLTRKKESCTLSHKNKETDVLSCGGNNLCDPFSKFTLTSDVDLSVRQAISDLDGWLAKADSGLVDDLEKLPYVCAAMQQLEQRKKYWNEHRACDVGKSSRLIDCGHRKPATVVNGTDVDDETRSYGWGPSSTDSHDQSKGIIMDNSNVRVCPDQTSDVERKVLDQEINPSSSYEEKTDIQRHPNGFGDSNESDSYNFYQAADGQHLMLHPLNMKCLLHHYGSYDMLPHRMSGRILQLETVTQSQAMRRRYRYLSHFPLTATFQLCEIDMSEMLPSESLAPFMDELKKRANQRRQLAKKERKEKIKAEAAFAHSVPIPTSSQLMFCDDFPPFSMDDFEALGNSTVSSSPPVVGGRSLFSNVARLGFAAGHDSPSLNIQETNGLHNHNTTTDSSGLTGLRNVEASSFANVISRAESLNSLNAPKTSDLGKKGKKPTRVLLSTAGGRRY 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1194 761 ProSitePatterns Zinc finger RING-type signature. 255 264 IPR017907 -
Lele16g1194 761 SMART ring_2 240 286 IPR001841 -
Lele16g1194 761 MobiDBLite consensus disorder prediction 1 62 - -
Lele16g1194 761 MobiDBLite consensus disorder prediction 430 454 - -
Lele16g1194 761 FunFam RING finger protein 10 233 301 - -
Lele16g1194 761 ProSiteProfiles Zinc finger RING-type profile. 240 286 IPR001841 -
Lele16g1194 761 MobiDBLite consensus disorder prediction 734 761 - -
Lele16g1194 761 SUPERFAMILY RING/U-box 239 292 - -
Lele16g1194 761 MobiDBLite consensus disorder prediction 168 190 - -
Lele16g1194 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 301 IPR013083 -
Lele16g1194 761 MobiDBLite consensus disorder prediction 440 454 - -
Lele16g1194 761 MobiDBLite consensus disorder prediction 88 154 - -
Lele16g1194 761 CDD RING-HC_RNF10 240 287 - -
Lele16g1194 761 MobiDBLite consensus disorder prediction 481 508 - -
Lele16g1194 761 Coils Coil 597 621 - -
Lele16g1194 761 Pfam Zinc finger, C3HC4 type (RING finger) 240 286 IPR018957 GO:0046872
Lele16g1194 761 MobiDBLite consensus disorder prediction 1 154 - -
Lele16g1194 761 PANTHER RING FINGER 10 FAMILY MEMBER 92 761 IPR039739 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1194 Lele-ChrLele16 6728359 6733492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1194 149 695 C3H Transcription Factor Family AT3G26730 57.679 0.0 633