Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1186 ATGTGTTATATACGAGTGAAGAGCACCGCGGGATTCATGTTTTCCAGGACTTTTGGATTCCAGAAGGAGAGAAGAAGAAGAAGAATTGAAGCATCTAGAGAGAGAGAGAGAGAGTTAAAGAAAGAAATAAACAAGGTGGATCGAAGGCATGGAAAGAGGCCTCTATCTTCTCATGAAGCGTCATCGGAGGAGGAAAAAAAGCAAGATTTCTTCATTCCTTCTGGATTCACATCGCTATCTCAGACCCAAACACAAGACAATTATGCCTCTCCCTTTCCTTATCTTATCAGTTCCACTAGTACCACCAACACCTTCCCAATCCCACAAATAACAACCTCTTCTGCTTTGATTGAGACTCAGATCAGCTCATCTCAGAATCCACCTCAAGGGAATATTATAGAAAGGAAAAGACATTATAGAGGAGTTAGGCAGAGACCGTGGGGGAAATGGGCAGCCGAAATCCGAGACCCAAACAAAGCAGCAAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGATGCTGCAGCTGCTTATGATGCTGCAGCTTTGAAGTTCAAAGGCAATAAGGCCAAGCTCAATTTCCCCGAACGTGTAGCTAATTTTCAAGCTCTTCCTCCTCGGCCTCCTCGGTCTGAGGCGGCGCCACTGCCGGATTCTTCTCAACCACCATGGCCACCTCCTCCGTCAGACCAGGGGTTCCCAAACCTAATGCAGTACGCTCAGGTGCTTTGTAGTAGGGATGACGATGATCTACAACGAGCTGCTTCGGGTCTTTATAGTTACCACCAGAGTGTTAATGAGTCATTTCTTTATGATTCTTCTTCATACTTCTCGTCGTCATCGGCAGTGAATTCGTCTTCTTCCACTACGGCTGGGTCTGATCAATTTCCCGGTGAACAACTAACGGGAGATCGTGGCTTTTCGGGTTCTTATTATTTTTTTGATAAGGAGACTGATGATTTTGATGGAAGCCACACAAGGTGA 984 0.4604 MCYIRVKSTAGFMFSRTFGFQKERRRRRIEASRERERELKKEINKVDRRHGKRPLSSHEASSEEEKKQDFFIPSGFTSLSQTQTQDNYASPFPYLISSTSTTNTFPIPQITTSSALIETQISSSQNPPQGNIIERKRHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEDAAAAYDAAALKFKGNKAKLNFPERVANFQALPPRPPRSEAAPLPDSSQPPWPPPPSDQGFPNLMQYAQVLCSRDDDDLQRAASGLYSYHQSVNESFLYDSSSYFSSSSAVNSSSSTTAGSDQFPGEQLTGDRGFSGSYYFFDKETDDFDGSHTR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1186 327 CDD AP2 138 196 IPR001471 GO:0003700|GO:0006355
Lele16g1186 327 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Lele16g1186 327 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Lele16g1186 327 SMART rav1_2 138 201 IPR001471 GO:0003700|GO:0006355
Lele16g1186 327 PANTHER DNA-BINDING DOMAIN 69 274 IPR044808 GO:0003700|GO:0009873
Lele16g1186 327 Coils Coil 22 49 - -
Lele16g1186 327 Pfam AP2 domain 138 187 IPR001471 GO:0003700|GO:0006355
Lele16g1186 327 MobiDBLite consensus disorder prediction 208 232 - -
Lele16g1186 327 MobiDBLite consensus disorder prediction 282 305 - -
Lele16g1186 327 MobiDBLite consensus disorder prediction 202 232 - -
Lele16g1186 327 FunFam Ethylene-responsive transcription factor 2 137 196 - -
Lele16g1186 327 MobiDBLite consensus disorder prediction 282 297 - -
Lele16g1186 327 SUPERFAMILY DNA-binding domain 138 196 IPR016177 GO:0003677
Lele16g1186 327 Gene3D AP2/ERF domain 137 197 IPR036955 GO:0003700|GO:0006355
Lele16g1186 327 MobiDBLite consensus disorder prediction 25 67 - -
Lele16g1186 327 ProSiteProfiles AP2/ERF domain profile. 138 195 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1186 Lele-ChrLele16 6679113 6682550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1186 135 259 AP2-EREBP Transcription Factor Family AT5G13330 55.303 1.76e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele16g1186 AP2 3.8e-15 CL0081