Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1178 ATGCCGCTGTTGCTGTTGCAGGATAAGCTAAGGCAAGGGTGTTTTGAGGTTCTTCAAAATGATGTTGACTTACTAAACCCTCCAGCTGAGCTGGAGAAGAAAAAGCACAAGCTCAAGCGACTTGTTCAGTCGCCAAACTCCTTTTTCATGGATGTTAAGTGCCAGGGTTGCTTCAACATAACCACTGTCTTTAGCCACTCTCAGACAGTTGTAGTATGTGGGAACTGCCAGACTGTCTTATGCCAGCCAACTGGTGGGCGTGCACGGCTAACTGAGGGTTGCTCTTTCAGGAAAAAGGGAGACTGA 306 0.4771 MPLLLLQDKLRQGCFEVLQNDVDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1178 101 Hamap 30S ribosomal protein S27e [rps27e]. 39 99 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele16g1178 101 PANTHER 40S RIBOSOMAL PROTEIN S27 17 101 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele16g1178 101 ProSitePatterns Ribosomal protein S27e signature. 53 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele16g1178 101 SUPERFAMILY Zn-binding ribosomal proteins 45 99 IPR011332 GO:0006412
Lele16g1178 101 Gene3D - 20 100 IPR023407 -
Lele16g1178 101 Pfam Ribosomal protein S27 45 99 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele16g1178 101 FunFam 40S ribosomal protein S27 16 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1178 Lele-ChrLele16 6626841 6627900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1178 17 101 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 92.941 1.07e-57 171