LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g1176	ATGATGAACCCATTTTCGTCGTCTACATCCAAGGCCAAAAAGAAGCAAACGGCGACAACAAGCACAGCTACGACAACAACACAAGAGCAAAAACATGAAACACCATGGGGAGGGAGGTACCTGGGTGTTCGGAGGAGGCCGTGGGGAAGATACGCGGCGGAGATCCGAGACCCTTCCACCAAAGAGAGGCATTGGCTTGGCACCTTCGACACTGCTGAAGAAGCCGCTTTGGCCTACGACAGGGCAGCTCGGTCCATGCGCGGCTCACGTGCCCGAACCAACTTCGTCTACTCCGATACACCCCCTGGTTCTTCTGTCACCTCCATTATCTCCCCCGACGAGCAAAGCCACCAAAACCACGACTTCTCGTCTTTCTTCGACCAAAATTCGCTCACCCAACAATCCTACCAGAATCCTCAACTCTCCGACAGGTTCATAGCGTTTACGGATAGTAATGCTTGGTCTTCATCACCTTCACCTGGGGCTTATAATTATCCACAACATCAAGTTTCAGCAACGGAGGGCCATAACCTAACACATTTCGAACAACTGTATGATGATAGTAACACTGAGCTCCCTCCTTTGCCGCCAGATATTACGAGCTCCGCGGGATACGACATGGGCAATGGGTTTTACGGTAACGAATTCGGGTACTCGGAGCAGAGCGCCGTGACGGAAACAAGCGGGGGATCGCTCTCGTACATGGGTATTGATTCGGTTGATTACGTGCATAGCCCGATGTTCAGCACGATGCCACCGGTGTCAGATAAGGAGCCGGAGGGCTTTGATTTGGGGAATTCTTCTTACTTCTTCTGA	816	0.5184	MMNPFSSSTSKAKKKQTATTSTATTTTQEQKHETPWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDTPPGSSVTSIISPDEQSHQNHDFSSFFDQNSLTQQSYQNPQLSDRFIAFTDSNAWSSSPSPGAYNYPQHQVSATEGHNLTHFEQLYDDSNTELPPLPPDITSSAGYDMGNGFYGNEFGYSEQSAVTETSGGSLSYMGIDSVDYVHSPMFSTMPPVSDKEPEGFDLGNSSYFF	271

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g1176	271	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	18	166	-	-
	Lele16g1176	271	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Lele16g1176	271	MobiDBLite	consensus disorder prediction	1	40	-	-
	Lele16g1176	271	SUPERFAMILY	DNA-binding domain	39	97	IPR016177	GO:0003677
	Lele16g1176	271	MobiDBLite	consensus disorder prediction	1	33	-	-
	Lele16g1176	271	CDD	AP2	39	95	IPR001471	GO:0003700\|GO:0006355
	Lele16g1176	271	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Lele16g1176	271	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Lele16g1176	271	FunFam	Ethylene-responsive transcription factor 2	39	97	-	-
	Lele16g1176	271	Gene3D	AP2/ERF domain	38	97	IPR036955	GO:0003700\|GO:0006355
	Lele16g1176	271	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Lele16g1176	271	Pfam	AP2 domain	40	88	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g1176	Lele-ChrLele16	6607851	6608666	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g1176	24	263	AP2-EREBP Transcription Factor Family	AT5G13910	46.215	1.75e-57	181

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele16g1176		AP2	1.7e-13	CL0081