Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1169 ATGGATTCCCTTGACACCGATCAGAATTACCCATCACAAAGTTCAGGCCTGGCAACTGATGGTGATGCACCTACTGATGCAGGAGATGATGTCAAATTGAGTTCTAGGGACCAAAGAGAAGCTCTATCAGGATCTGGAAAGTCTGCTTCATTTTTAATTCCAATAGTGTCTCATTGTGCAAGGCATCGCCTTGAGCATGCTTCTGATAAGAAGACGCCATTAGCTATGGTGTTAACACCTACGAGAGAGATCTGTATTCAGGTTGAAGAGCAAGCTAAATTGCTTGGAAAGGGATTGCCTTTTAAAACTGCACTTGTGGTTGGTGGTGATGCCATGGCTGGAGAGGTCTATCGCATTCAGCAAGGAGTAGAACTGATTGTAGGAACTCCAGGAAGGCTGGTTGATCTTTTAACAAAGCATGAGATTGACTTGGATAATATGATGACATTTGTCGTGGATGAGGTGGACTGCATGCTGGAAAGGGGTTTCCGAGATCAAGTCATGCAGATATTTAGGGCTTTGTCCCAGCCACAGGTCTTGATGTATACGGCAACAATCTCTCATGAGTTAGAGAAGATGGCAAACTCTCTGGCGAAAGATACTGTGGTTATATCTGTTGGCGAGCCTAATAGACCAAATAAAGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCAAAGCAGAAGAAGAAGAAACTGTTTGACATTTTGGTCAGTAAGCAGCATTTTAAGCCACCTGTGGTTGTGTATGTGGGGTCTAGACTTGGGGCAGATTTTCTGGCCAATGCCATTACGGTTATCACTGGGATCAAAGCACTGTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATTATGAGATCCTTTTTAGTAGGTGAGGTTCCAGTGGTTGTGGCAACTGGAGTTTTGGGTAGAGGGGTTGATCTATTAGGTGTAAGACAGGTAATTGTGTTTGACATGACTAATTCAATTAAGGAGTATGTACATCAGCTTGGAAGGGCGTCTAGGATGGGAGAGGAAGGTCAAGCCATGGTTTTTGTGAATGAGGAGAATAAGAATGTATTTGCGGAGTTCACTGAAGTCTTAAAATCTGCCGGAGCAGCTGTTCCTCGGGAGCTTGTCAACTCACGATATACCAAGGGATTTTTCTCTGGTGGCAAAGATATGGAACGATTGCTTGAAGTTTTCAGGCAATTGCCAGACCAGGGCATGAGGAACGGAACTTATTATTGGGGTGAAAGTTCCAGTTCAACATCTCTTAGCAGTCAGAATGACACTGAGGATGATCGGATGATTGCTGTTGTACTATCAGAGGAGTATGCAAAATTGGATGGTGCGGTTGGTACACGACTTTCCAACTTGGCACCTGTTCCTCATGTGCCCCGGATAAATACCTTCATCCCCAACATAAGTGATGCCAGGGTGGATCACCAGCGTCTTCTTGACAGGCTAATGATATATGGTCTATGTGAAGTTAGAGTCTCTGGTGACGGAAACTGTCAGTTCCGGGCTATTTCAGATCAGATGTACAAGTCACCCGAACATCACAAGTATGTTCGAAAAGAGATTGTGAAACAGCTCAAAGATCACCGTTCCTTATACGAATGCTATGTCCCAATGCAGTACAAACTGTATTGCAAGAAAATGAAAAAATCTGGAGAATGGGGAGACCATGTTACCTTACAAGCAGCTGCAGACAAGTTTGCTGCAAAGATATGTCTTTTGACCTCGTTCAGAGACACGTGTTTTGTTGAAATTACGCCGCAGAATACAGCACCAAAGTGTCTGTTGTGGCTGAGCTTCTGGTCTGAAGTTCATTACAATTCACTATATGCATTTCAGGGTGCCCCGGTCAGGCATAAACCAAAGAAGAAACACTGGTTATTCTAG 1893 0.4395 MDSLDTDQNYPSQSSGLATDGDAPTDAGDDVKLSSRDQREALSGSGKSASFLIPIVSHCARHRLEHASDKKTPLAMVLTPTREICIQVEEQAKLLGKGLPFKTALVVGGDAMAGEVYRIQQGVELIVGTPGRLVDLLTKHEIDLDNMMTFVVDEVDCMLERGFRDQVMQIFRALSQPQVLMYTATISHELEKMANSLAKDTVVISVGEPNRPNKAVKQLAIWVESKQKKKKLFDILVSKQHFKPPVVVYVGSRLGADFLANAITVITGIKALSIHGEKSMKERREIMRSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMTNSIKEYVHQLGRASRMGEEGQAMVFVNEENKNVFAEFTEVLKSAGAAVPRELVNSRYTKGFFSGGKDMERLLEVFRQLPDQGMRNGTYYWGESSSSTSLSSQNDTEDDRMIAVVLSEEYAKLDGAVGTRLSNLAPVPHVPRINTFIPNISDARVDHQRLLDRLMIYGLCEVRVSGDGNCQFRAISDQMYKSPEHHKYVRKEIVKQLKDHRSLYECYVPMQYKLYCKKMKKSGEWGDHVTLQAAADKFAAKICLLTSFRDTCFVEITPQNTAPKCLLWLSFWSEVHYNSLYAFQGAPVRHKPKKKHWLF 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1169 630 Pfam Helicase conserved C-terminal domain 230 339 IPR001650 -
Lele16g1169 630 SMART helicmild6 257 339 IPR001650 -
Lele16g1169 630 Gene3D - 474 619 - -
Lele16g1169 630 FunFam OTU domain-containing protein 472 618 - -
Lele16g1169 630 Pfam OTU-like cysteine protease 497 591 IPR003323 -
Lele16g1169 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 355 IPR027417 -
Lele16g1169 630 MobiDBLite consensus disorder prediction 1 20 - -
Lele16g1169 630 MobiDBLite consensus disorder prediction 1 42 - -
Lele16g1169 630 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 215 378 IPR001650 -
Lele16g1169 630 Gene3D - 39 214 IPR027417 -
Lele16g1169 630 CDD SF2_C_DEAD 216 348 - -
Lele16g1169 630 ProSiteProfiles OTU domain profile. 490 614 IPR003323 -
Lele16g1169 630 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 204 IPR014001 -
Lele16g1169 630 SMART ultradead3 29 219 IPR014001 -
Lele16g1169 630 SUPERFAMILY Cysteine proteinases 470 613 IPR038765 -
Lele16g1169 630 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 34 376 - -
Lele16g1169 630 Pfam DEAD/DEAH box helicase 41 192 IPR011545 GO:0003676|GO:0005524
Lele16g1169 630 Gene3D - 215 383 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1169 Lele-ChrLele16 6555251 6562241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1169 39 359 Eukaryotic Initiation Factors Gene Family AT1G72730 31.288 3.33e-42 155