Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1146 ATGCCAAGACGCATGGGAGCACTGGCACAGAATTGGGACACCAAGGTTTGGTTTTCTTCCTCTTCCCATCTCTCTTTAGAATTTAAAAAAATACACTTGACGGACATGGATGTTTGCCGGAATGCATCAGTTGCCGGCGACTGCGAACAAGAGCAGGTCCTACTGTCTTCTCGCCCAAAGCTTTCTACCTTCTCAACCACTCTTGACGACCTCTTCTCTTCTCATAACACGGAAGTGGATGTTGGCTTAGAATGGCTTTCTGTATTTGTGGAAGACTGTTTTTCCAGCCCAGCATGTTGCCTCTTGGCACCTACTGATGCCCTAAACACACAGGCAAACTCTAAACCCTCCGTACAATTACATAGAACCCAGCAACAAAAGCAGTCTCCTCTGCAAAATTTTGTGGTGCCAGGAAAGGCAAGAAGCAAGAGGAAAAGGCTTTCAGCCCATAGAACCAAGGACCCATTAAGCAGCTGGTCACACCATTTGAACCCACAAAATGAACCCATAACTCCAGACCCTCCTCTTCTTAAACAAGCCTACTGGTTAGCTGATAGTGAACTCATGGTACCCAAGAAGGAAGATGAGCAAGTAGCAACAAAGGATGAAGAAGCAGAGGAAGAGGTAGTGGAAGAGAAGAGGACTGTGAGGAAGAAGGAGAGTTTTGAGAGCTTAGTCTCAGAGTGTGAAGAAGGTAGCAATGGGCAGAATCAAATGCCAAGAAGGTGTACCCATTGCCTTGCACAGAGGACCCCACAATGGAGGGCCGGGCCATTGGGTCCAAAAACACTATGTAATGCATGTGGAGTGAGGTACAAGTCTGGTAGATTGCTTCCAGAATATAGGCCAGCCAAGAGCCCTACTTTTGTAAGCTACTTGCACTCCAATTCCCACAAAAAGGTCATGGAGATGAGAATGGCTGTTCTGTCTTCTGTTCCTAGTGAGGATTAA 951 0.4669 MPRRMGALAQNWDTKVWFSSSSHLSLEFKKIHLTDMDVCRNASVAGDCEQEQVLLSSRPKLSTFSTTLDDLFSSHNTEVDVGLEWLSVFVEDCFSSPACCLLAPTDALNTQANSKPSVQLHRTQQQKQSPLQNFVVPGKARSKRKRLSAHRTKDPLSSWSHHLNPQNEPITPDPPLLKQAYWLADSELMVPKKEDEQVATKDEEAEEEVVEEKRTVRKKESFESLVSECEEGSNGQNQMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLSSVPSED 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1146 316 Gene3D - 233 304 IPR013088 GO:0006355|GO:0008270
Lele16g1146 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 238 301 - -
Lele16g1146 316 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355|GO:0043565
Lele16g1146 316 SMART GATA_3 237 291 IPR000679 GO:0006355|GO:0043565
Lele16g1146 316 PANTHER GATA TRANSCRIPTION FACTOR 47 310 - -
Lele16g1146 316 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Lele16g1146 316 MobiDBLite consensus disorder prediction 137 171 - -
Lele16g1146 316 CDD ZnF_GATA 242 289 IPR000679 GO:0006355|GO:0043565
Lele16g1146 316 FunFam GATA transcription factor 233 313 - -
Lele16g1146 316 Pfam GATA zinc finger 243 277 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1146 Lele-ChrLele16 6421769 6423707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1146 56 305 C2C2-Gata Transcription Factor Family AT4G32890 38.281 6.24e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele16g1146 GATA 1.4e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0676 05 3989437 3990697 Lele16g1146 16 6421769 6423707 CCT
Lele13g1330 13 23298750 23300591 Lele16g1146 16 6421769 6423707 hybridization
Lele14g1236 14 21626156 21630638 Lele16g1146 16 6421769 6423707 hybridization