Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1142 ATGGCAATTGCACGAACGGGAGTCTATGTCGACGACTATTTGGAGTACGCGAGTACACTGCCTGCTGAGCTTCAGAGGTTGCTCAATACCATCAGAGAACTCGATGACCGATCCCAATCTATGATAAACCAGACAAGGCAGCAGACAAAGTACTGCATGGGGTTGTCATCACATGGCTATAAGAAGGGTTATCATAGCAGTGGCCATCATTATAATAACAATAATATGAATGAAGAAGATGACATTGCAATCGAGAAAATGAGAAAAGAAATTGAGGCAAATCAAGATAGTGCATTTAGTCTATGTACTGAGAAGGTTTTATTGGCAAGGCAAGCATATGACCTGATTGATAGCCATGTAAAGCGACTTGATGAGGATTTGAACAACTTTGCTGAAGATCTAAAGCAAGAGGGGAAAATACCACCAGATGAACCAGCAATTCTTCCCCCATTGCCTCTAGTTCTTAAAAGTGAAAACCGCAAGTCCAATATGTATGGAACACCTCAATCAAAGAGAGTTGATTACCGGGATAGAGACTGGGATAGAGAGCGTGATAGGGACTTTGAGCTCATGCCTCCGCCAGGAAGCCATAAAAAGGATTATACAGCTCCTGTGGATTTTGATCAACCAATTGATCCTAATGAACCCACGTACTGTGTTTGTCATCAGGTGTCTTTTGGTGATATGATTGCATGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTCCACTATGCATGTGTTGGCCTAACGCCAGAGACAAGATTCAAGGGAAAGTGGTATTGCCCAACCTGCAAATTGCTTCCACAGTGTCAATGA 819 0.4274 MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDDRSQSMINQTRQQTKYCMGLSSHGYKKGYHSSGHHYNNNNMNEEDDIAIEKMRKEIEANQDSAFSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPLVLKSENRKSNMYGTPQSKRVDYRDRDWDRERDRDFELMPPPGSHKKDYTAPVDFDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCKLLPQCQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1142 272 Pfam PHD-finger 218 266 IPR019787 -
Lele16g1142 272 PANTHER INHIBITOR OF GROWTH PROTEIN 2 266 IPR028651 -
Lele16g1142 272 SUPERFAMILY FYVE/PHD zinc finger 199 266 IPR011011 -
Lele16g1142 272 SMART ING_2 9 130 IPR024610 -
Lele16g1142 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 267 IPR013083 -
Lele16g1142 272 FunFam PHD finger protein ING 210 268 - -
Lele16g1142 272 CDD ING_plant 17 127 - -
Lele16g1142 272 CDD PHD_ING 218 265 - -
Lele16g1142 272 Gene3D - 5 128 - -
Lele16g1142 272 ProSiteProfiles Zinc finger PHD-type profile. 216 268 IPR019787 -
Lele16g1142 272 Coils Coil 24 44 - -
Lele16g1142 272 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Lele16g1142 272 SMART PHD_3 218 266 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1142 Lele-ChrLele16 6406504 6409596 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele16g1142 ING 1.8e-18 No_clan